The provided code converts Recon3D_301.mat human metabolism data obtained from Virtual Metabolic Human database (https://www.vmh.life/) to edge lists.
For genes, NCBI ID - Approved Symbol conversion is done using the file obtained from HGNC (https://www.genenames.org/).
The resulting networks are available in http://www.ndexbio.org/.
This study was conducted with Maroua Chahdil in the team of Anaïs Baudot (https://www.marseille-medical-genetics.org/a-baudot/).
Recon3D
https://www.vmh.life/
https://www.nature.com/articles/nbt.4072
Recon3D is licensed under a Creative Commons Attribution-NonCommercial 2.0 Generic (CC BY-NC 2.0, https://creativecommons.org/licenses/by-nc/2.0/)
HGNC Database, HUGO Gene Nomenclature Committee (HGNC), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom www.genenames.org. Data downloaded on 11 December 2020 https://pubmed.ncbi.nlm.nih.gov/30304474/