gsm_single.json

{
    "GSM4339769": {
        "accession": "GSM4339769",
        "supplementary_files": [
            {
                "filename": "GSM4339769_C141_filtered_feature_bc_matrix.h5",
                "url": "ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339769/suppl/GSM4339769_C141_filtered_feature_bc_matrix.h5",
                "size": "21360104"
            }
        ],
        "platform": {
            "accession": "GPL23227",
            "title": "BGISEQ-500 (Homo sapiens)"
        },
        "samples": {
            "SRS6216589": {
                "accession": "SRS6216589",
                "title": "BALF, C141 (scRNA-seq)",
                "organism": "Homo sapiens",
                "attributes": {
                    "source_name": "BALF",
                    "disease state": "Coronavirus infected disease-19 (COVID-19)",
                    "patient group": "mild",
                    "tissue": "lung",
                    "sample type": "BALF",
                    "cell subsets": "Total cell",
                    "ENA-SPOT-COUNT": 2825449586,
                    "ENA-BASE-COUNT": 177690492174,
                    "ENA-FIRST-PUBLIC": "2020-04-23",
                    "ENA-LAST-UPDATE": "2020-04-24"
                },
                "experiments": {
                    "SRX7802546": {
                        "accession": "SRX7802546",
                        "title": "BGISEQ-500 paired end sequencing; GSM4339769: BALF, C141 (scRNA-seq); Homo sapiens; RNA-Seq",
                        "platform": "BGISEQ",
                        "instrument": "BGISEQ-500",
                        "runs": {
                            "SRR11181954": {
                                "accession": "SRR11181954",
                                "experiment": "SRX7802546",
                                "study": "SRP250732",
                                "sample": "SRS6216589",
                                "title": "BGISEQ-500 paired end sequencing; GSM4339769: BALF, C141 (scRNA-seq); Homo sapiens; RNA-Seq",
                                "attributes": {
                                    "loader": "fastq-load.py",
                                    "options": "--read1PairFiles=\"C141_R1.fastq.gz\"   --read2PairFiles=\"C141_R2.fastq.gz\"",
                                    "ENA-SPOT-COUNT": 2825449586,
                                    "ENA-BASE-COUNT": 177690492174,
                                    "ENA-FIRST-PUBLIC": "2020-04-23",
                                    "ENA-LAST-UPDATE": "2020-07-30"
                                },
                                "files": {
                                    "ftp": [
                                        {
                                            "url": "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR111/054/SRR11181954/SRR11181954.fastq.gz",
                                            "md5": "366a3a273a85e820bddbcb1e58df383b",
                                            "size": 147793265862
                                        }
                                    ],
                                    "aws": [
                                        {
                                            "url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181954/C141_R1.fastq.1"
                                        },
                                        {
                                            "url": "https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11181954/C141_R2.fastq.1"
                                        }
                                    ],
                                    "gcp": [
                                        {
                                            "url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181954/C141_R1.fastq.1"
                                        },
                                        {
                                            "url": "https://storage.googleapis.com/nih-sequence-read-archive/sra-src/SRR11181954/C141_R2.fastq.1"
                                        }
                                    ],
                                    "ncbi": [
                                        {
                                            "url": "https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos3/sra-pub-run-19/SRR11181954/SRR11181954.2"
                                        }
                                    ]
                                }
                            }
                        }
                    }
                }
            }
        }
    }
}