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Hello! Since SparseArray is no longer a subclass of numpy.ndarray (pandas>=0.24.0) it is not possible to concatenate dataframes with SparseArray dtype using pandas.concat.
The problem is SparseArray has not attribute view which is used in pandas.core.internals.managers.py at function concatenate_block_managers when parameter copy is False.
Actual Output
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-6-d61b58c595ad> in <module>
----> 1 pd.concat([a, b], axis=1, copy=False)
~/.conda/envs/pandas_dev/lib/python3.7/site-packages/pandas/core/reshape/concat.py in concat(objs, axis, join, join_axes, ignore_index, keys, levels, names, verify_integrity, sort, copy)
256 )
257
--> 258 return op.get_result()
259
260
~/.conda/envs/pandas_dev/lib/python3.7/site-packages/pandas/core/reshape/concat.py in get_result(self)
471
472 new_data = concatenate_block_managers(
--> 473 mgrs_indexers, self.new_axes, concat_axis=self.axis, copy=self.copy
474 )
475 if not self.copy:
~/.conda/envs/pandas_dev/lib/python3.7/site-packages/pandas/core/internals/managers.py in concatenate_block_managers(mgrs_indexers, axes, concat_axis, copy)
2044 values = values.copy()
2045 elif not copy:
-> 2046 values = values.view()
2047 b = b.make_block_same_class(values, placement=placement)
2048 elif is_uniform_join_units(join_units):
AttributeError: 'SparseArray' object has no attribute 'view'
Output of pd.show_versions()
INSTALLED VERSIONS
commit : None
python : 3.7.5.final.0
python-bits : 64
OS : Linux
OS-release : 3.10.0-957.1.3.el7.x86_64
machine : x86_64
processor :
byteorder : little
LC_ALL : C.UTF-8
LANG : C.UTF-8
LOCALE : en_US.UTF-8
The text was updated successfully, but these errors were encountered:
MezentsevIlya
changed the title
Not possible to concatenate DataFrames with sparse data
Not possible to concatenate DataFrames with sparse data without copying
Dec 18, 2019
Code Sample
Problem description
Hello! Since
SparseArray
is no longer a subclass ofnumpy.ndarray
(pandas>=0.24.0) it is not possible to concatenate dataframes withSparseArray
dtype usingpandas.concat
.The problem is
SparseArray
has not attributeview
which is used inpandas.core.internals.managers.py
at functionconcatenate_block_managers
when parametercopy
isFalse
.Actual Output
Output of
pd.show_versions()
INSTALLED VERSIONS
commit : None
python : 3.7.5.final.0
python-bits : 64
OS : Linux
OS-release : 3.10.0-957.1.3.el7.x86_64
machine : x86_64
processor :
byteorder : little
LC_ALL : C.UTF-8
LANG : C.UTF-8
LOCALE : en_US.UTF-8
pandas : 0.25.3
numpy : 1.17.4
pytz : 2019.3
dateutil : 2.8.1
pip : 19.3.1
setuptools : 42.0.2.post20191203
Cython : 0.29.14
pytest : None
hypothesis : None
sphinx : None
blosc : None
feather : None
xlsxwriter : None
lxml.etree : None
html5lib : None
pymysql : None
psycopg2 : None
jinja2 : None
IPython : 7.10.2
pandas_datareader: None
bs4 : None
bottleneck : None
fastparquet : None
gcsfs : None
lxml.etree : None
matplotlib : 3.1.2
numexpr : None
odfpy : None
openpyxl : None
pandas_gbq : None
pyarrow : None
pytables : None
s3fs : None
scipy : 1.4.0
sqlalchemy : None
tables : None
xarray : None
xlrd : None
xlwt : None
xlsxwriter : None
The text was updated successfully, but these errors were encountered: