.travis.yml

branches:
  only:
    - master
    - develop
    # Release branches, otherwise they cannot be merged into protected master
    - /^release.*/
    # Version tags
    - /^v\d+\.\d+(\.\d+)?(-\S*)?$/

matrix:
  fast_finish: true
  include:
    - os: linux
      dist: bionic
      language: python
      python: 3.8
      compiler: gcc
      addons:
        apt:
          packages:
            - libhdf5-serial-dev
            - zlib1g-dev
            - libatlas-base-dev
            - lcov
            - libboost-serialization-dev
            - g++-5
            - libc6-dbg
      env:
        - ENABLE_GCOV_COVERAGE=TRUE
        - CI_BUILD=TRUE
        - CI_CPPUTEST=TRUE
        - CI_PYTHON=TRUE
        - CI_ARCHIVE=TRUE
        - CI_NOTEBOOK=TRUE
      before_install:
        - ./scripts/buildValgrind.sh
      after_script:
        # cpputest coverage cpp
        - lcov --compat-libtool --no-external --directory ${BASE_DIR}/build/CMakeFiles/amici.dir/src --base-directory ${BASE_DIR} --capture --output-file coverage_cpp.info
        # py coverage cpp
        - lcov --compat-libtool --no-external --directory ${BASE_DIR}/python/sdist/build/temp.linux-x86_64-${TRAVIS_PYTHON_VERSION}/amici/src --base-directory ${BASE_DIR} --capture --output-file coverage_py.info
        - lcov -a coverage_cpp.info -a coverage_py.info -o coverage.info
        - bash <(curl -s https://codecov.io/bash) -f coverage.info -X fix -F cpp
        # py coverage py
        - bash <(curl -s https://codecov.io/bash) -f coverage_py.xml -F python
      before_deploy:
        - cd $BASE_DIR
      deploy:
        skip_cleanup: true
        provider: script
        script: scripts/deployPyPi.sh
        on:
          branch: master
          tags: true

    - os: linux
      dist: bionic
      language: python
      python: 3.7
      compiler: gcc
      addons:
        apt:
          packages:
            - libhdf5-serial-dev
            - zlib1g-dev
            - libatlas-base-dev
            - g++-5
            - libc6-dbg
      env:
        - CI_BUILD=TRUE
        - CI_PYTHON=TRUE
        - CI_NOTEBOOK=TRUE

    - os: osx
      osx_image: xcode11
      language: minimal
      compiler: clang
      env:
        - CI_BUILD=TRUE
        - CI_CPPUTEST=TRUE
        - CI_CMAKE=TRUE
        - CI_ARCHIVE=TRUE
        - CI_CPPCHECK=TRUE
        - CI_PYTHON=TRUE
        - CI_NOTEBOOK=TRUE
      addons:
        homebrew:
          packages:
            - hdf5
            - swig
            - gcc
            - cppcheck
          update: true
      before_install:
        - travis_wait brew link --overwrite gcc # fix linker warning regarding /usr/local/include/c++
        - brew link --overwrite python # https://github.com/ICB-DCM/AMICI/issues/894
        - export -f travis_fold travis_nanoseconds travis_time_start travis_time_finish
        - pip3 install --user -U numpy
      after_success:
        - cd $BASE_DIR # cd to base dir for correct relative path in deploy

    - os: osx
      osx_image: xcode11
      language: minimal
      compiler: clang
      env:
        - CI_DOC=TRUE
      addons:
        homebrew:
          casks:
            - mactex
          packages:
            # - doxygen # disabled because current 1.8.16 does not work with recent ghostscript
            - bison # doxygen build
            - ragel
            - graphviz
          update: true
      before_install:
        - export PATH=/Users/travis/Library/Python/3.7/bin:/Library/TeX/texbin:$PATH
        - export -f travis_fold travis_nanoseconds travis_time_start travis_time_finish
        - brew link --overwrite python # https://github.com/ICB-DCM/AMICI/issues/894
      after_success:
        - cd $BASE_DIR # cd to base dir for correct relative path in deploy
      deploy:
        provider: pages
        local-dir: doc
        skip-cleanup: true
        github-token: $GITHUB_TOKEN  # Set in the settings page of your repository, as a secure variable
        keep-history: false
        verbose: true
        on:
          branch: master

install:
    - export BASE_DIR=`pwd`
    # Build swig4.0 (not yet available with apt) to include pydoc in source distribution for pypi
    - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then scripts/downloadAndBuildSwig.sh && export PATH=${BASE_DIR}/ThirdParty/swig-4.0.1/install/bin:${PATH}; fi
    - if [[ "$CI_DOC" == "TRUE" ]]; then pip3 install --user --upgrade pip==9.0.3 doxypypy; fi # pinning pip because of https://github.com/pypa/pip/issues/5240
    - if [[ "$CI_DOC" == "TRUE" ]]; then export PATH="/usr/local/opt/bison/bin:$PATH"; LDFLAGS="-L/usr/local/opt/bison/lib" scripts/downloadAndBuildDoxygen.sh; fi
    - if [[ "$CI_BUILD" == "TRUE" ]] && [[ "$TRAVIS_OS_NAME" == "linux" ]]; then pip3 install --upgrade pip==9.0.3 setuptools wheel pkgconfig scipy; fi
    - if [[ "$CI_BUILD" == "TRUE" ]] && [[ "$TRAVIS_OS_NAME" != "linux" ]]; then pip3 install --user --upgrade pip==9.0.3 setuptools wheel pkgconfig scipy; fi
    - if [[ "$CI_BUILD" == "TRUE" ]]; then ./scripts/buildSuiteSparse.sh; fi
    - if [[ "$CI_BUILD" == "TRUE" ]]; then ./scripts/buildSundials.sh; fi
    - if [[ "$CI_BUILD" == "TRUE" ]]; then ./scripts/buildCpputest.sh; fi
    - if [[ "$CI_PYTHON" == "TRUE" ]]; then ./scripts/buildBNGL.sh; fi
    - if [[ "$CI_BUILD" == "TRUE" ]]; then ./scripts/buildAmici.sh; fi
    - if [[ "$CI_ARCHIVE" == "TRUE" ]]; then ./scripts/installAmiciArchive.sh; fi
    - if [[ "$CI_PYTHON" == "TRUE" ]]; then ./scripts/installAmiciSource.sh; fi

script:
    - export -f travis_fold travis_nanoseconds travis_time_start travis_time_finish
    - export FOLD=$BASE_DIR/scripts/travis_wrap.sh
    - cd $BASE_DIR
    - if [[ "$CI_CPPCHECK" == "TRUE" ]]; then $FOLD cppcheck ./scripts/run-cppcheck.sh; fi
    - if [[ "$CI_NOTEBOOK" == "TRUE" ]]; then $FOLD notebooks "cd $BASE_DIR && scripts/runNotebook.sh python/examples/example_*/"; fi
    - if [[ "$CI_PYTHON" == "TRUE" ]] && [[ "$ENABLE_GCOV_COVERAGE" == "TRUE" ]]; then $FOLD codecov ./scripts/run-codecov.sh; fi
    - if [[ "$CI_PYTHON" == "TRUE" ]] && [[ "$ENABLE_GCOV_COVERAGE" != "TRUE" ]]; then $FOLD python-tests ./scripts/run-python-tests.sh; fi
    # needs to be run after python tests
    - if [[ "$CI_CMAKE" == "TRUE" ]]; then $FOLD cmake ./tests/testCMakeCompilation.sh; fi
    - if [[ "$CI_CPPUTEST" == "TRUE" ]] && [[ "$TRAVIS_OS_NAME" == "linux" ]]; then $FOLD valgrind ./scripts/run-valgrind.sh; fi
    - if [[ "$CI_CPPUTEST" == "TRUE" ]] && [[ "$TRAVIS_OS_NAME" != "linux" ]]; then $FOLD cpputest ./scripts/run-cpputest.sh; fi
    - if [[ "$CI_DOC" == "TRUE" ]]; then $FOLD doxygen ./scripts/run-doxygen.sh; fi

after_failure:
    - $FOLD ls -alR

# cache dependencies
cache:
  directories:
    - $HOME/Library/Caches/Homebrew
    - $HOME/Library/Caches/pip
    - $HOME/.cache/pip
  timeout: 1200

before_cache:
  - brew cleanup