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Single-cell data analysis #22

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pawel-czyz opened this issue Mar 8, 2024 · 1 comment
Closed

Single-cell data analysis #22

pawel-czyz opened this issue Mar 8, 2024 · 1 comment

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@pawel-czyz
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Take some single-cell data.

Split samples into:

  1. Training.
  2. Validation.
  3. Test.

Train a random forest on training, evaluate on validation, evaluate on test.

The plot:

  1. PCA of normalized data coloured by cell types.
  2. PCA of normalized data coloured by samples.
  3. Estimate cell type prevalence. Compare with measured frequencies.
@pawel-czyz
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Resolved by #23

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