pacea-release-talk.Rmd

---
title: "Introducing pacea"
subtitle: "An R package of Pacific ecosystem information to help facilitate an ecosystem approach to fisheries management"
author: "Andrew Edwards and Travis Tai"
output:
  beamer_presentation:
    theme: Singapore
    colortheme: orchid
    # Second-level headings create new slide
    slide_level: 2
    toc: false
    # fig_height: 5
    # fig_width: 8
    keep_tex: yes
    includes:
      in_header: latex-topmatter.tex
    # toc_depth: 1
    #  title_page_image: "../man/figures/logo.png"
    #  title_page_image_height_in: 1
    #  title_page_image_width_in: 2
header-includes:
  - \titlegraphic{\includegraphics[width = 1cm]{"../man/figures/logo.png"}}
  - \AtBeginSubsection{}
  - \AtBeginSection{}
  - \usepackage{colortbl}
  - \usepackage{booktabs}
  - \usepackage{multirow}
classoption: "aspectratio=169"
# This affects font sizes in figures also:
fontsize: 12pt
urlcolor: blue
---

<!-- To build:

load_all()      # as necessary, then

rmarkdown::render("pacea-release-talk.Rmd")

or click the knit button in RStudio

Note the first slide below creates the title slide (on page 2), from a
   powerpoint slide saved as .png.

When talk is finished save the .pdf with a new name
(e.g. pacea-release-talk-dfo.pdf, pacea-release-talk-uvic.pdf) and commit the
.pdf, so we can just keep the single set of .Rmd code. Also link the pdf talk
from README.Rmd.
-->

<!-- trying different themes from https://mpetroff.net/files/beamer-theme-matrix/
theme:
Copenhagen - too much at bottom
Frankfurt - shows progress bar at top (play with colours though), nothing at bottom.
Luebeck - awful (lists sections vertically at the top)
metropolis - too many borders
Rochester - slide title is in top border, but that's really big
Singapore - used for hake, slide title does take up a bit of room, looks good with lily

colortheme:
dolphin - black top bar for Frankfurt
lily
orchid
-->

<!-- Font size options, put any of these before text or chunk, then put
     \normalsize afterwards to continue
\tiny
\scriptsize
\footnotesize
\small
\normalsize
\large
\Large
\LARGE
\huge
\Huge
-->

```{r, setup, include = FALSE}
long_talk <- TRUE     # if FALSE then chunks with eval=long_talk will not be
                      # evaluated, as we are writing a shorter version. This
                      # should build, if not just use commit 9f5f209, which has
                      # no long_talk options. From now on we are only
                      # maintaining pacea-talk.Rmd.

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  global.par = TRUE,  # set par values to be global (once changed)
  fig.width = 6,
  fig.height = 4,
  fig.align = "center",
  out.width = "60%"
  #out.height = 400
)

# load_all()    # Do this the first time and if update the package while writing
# the talk. Have commented as it reloads each time, which isn't necessary.
library(dplyr)
library(tibble)
library(kableExtra)

options(pillar.print_max = 6,   # number of rows to show for a tibble
        pillar.print_min = 6)
par("mai" = c(1.02, 0.82, 0.3, 0.42))   # default is 1.02 0.82 0.82 0.42

# https://bookdown.org/yihui/rmarkdown-cookbook/font-color.html . For example:
# `r colorize("hello", "blue")`
colorize <- function(x, color){
  if(knitr::is_latex_output()) {
    sprintf("\\textcolor{%s}{%s}", color, x)
  } else if(knitr::is_html_output()) {
    sprintf("<span style='color: %s;'>%s</span>", color,
      x)
  } else x
}
```

```{r coverpage, echo=FALSE, out.width = "100%"}
knitr::include_graphics(paste0(here::here(),
                               "/talks/talks-manual-figures/pacea-release-title-slide-uvic.png"))
```

```{r introduction, child = "introduction.Rmd"}
```

```{r buoys, child = "buoys.Rmd"}
```

```{r indices, child = "indices.Rmd"}
```

```{r populations, child = "populations.Rmd"}
```

```{r oisst, child = "oisst.Rmd"}
```

```{r bccm, child = "bccm.Rmd"}
```

```{r summary, child = "summary.Rmd"}
```