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add documentation for try...catch statements #183

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juancresc opened this issue Dec 12, 2019 · 1 comment

juancresc commented Dec 12, 2019

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juancresc commented Dec 12, 2019

I tried this, it does execute but if there's an error in the command, it breaks

    try{
        sys sw/TrimGalore-0.6.5/trim_galore --paired $sample_1 $sample_2 --output_dir data/clean/
    }catch (Exception e){
        print "error in $sample_1 $sample_2\n"
    }

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