thesis.tex

% !TEX spellcheck = en-US

\documentclass[twoside,a4,12p]{report} %,draft,openright]

\usepackage{amsmath}%for equation split
\usepackage{mathalfa}%
\usepackage{epsfig}
\usepackage{graphicx}
\usepackage{float}
\usepackage{subfigure}
\usepackage{url}
\usepackage{color}
\usepackage{multirow}
\usepackage{array}
%\usepackage{mathrsfs}
\usepackage[mathscr]{euscript}
\usepackage{CJKutf8}
%\usepackage[T1]{fontenc}
%\AtBeginDvi{\input{zhwinfonts}}


% define arg min 
\DeclareMathOperator*{\argmin}{arg\,min}

% Add psudeo-code 
\usepackage{algorithm}
\usepackage{algorithmic}
%\usepackage{algpseudocode}% http://ctan.org/pkg/algorithmicx
\makeatletter
\newcommand\fs@ruled@notop{\def\@fs@cfont{\bfseries}\let\@fs@capt\floatc@ruled

  \def\@fs@pre{}%
  \def\@fs@post{\kern2pt\hrule\relax}%
  \def\@fs@mid{\kern2pt\hrule\kern2pt}%
  \let\@fs@iftopcapt\iftrue}
\renewcommand\fst@algorithm{\fs@ruled@notop}
\makeatother
\restylefloat{algorithm}


\usepackage{latexsym,amssymb}
\usepackage{setspace,cite}
% for margins left, right top bottom
\usepackage{anysize}
\marginsize{4cm}{2.5cm}{4cm}{4cm}

\usepackage[pdftex,
  bookmarks=true,%                   %%% generate bookmarks ...
  bookmarksnumbered=true,%           %%% ... with numbers
  bookmarksopen=true,%               %%% show complete tree of bookmarks
  hypertexnames=true,%              %%% needed for correct links to figures !!!
  breaklinks=true,%                  %%% break links if exceeding a single line
  colorlinks=true,
  linkcolor=black,
  citecolor=blue,
  pagecolor=blue,
  pagebackref=false,
  urlcolor=blue]{hyperref}


%\usepackage{draft} %draft option - doesn't put full figures in -
            % useful when editing

%does the headers on the pages - keep in
\usepackage{fancyhdr}

%omitting any of these makes the thesis compile without the omitted
%chapter - good for editing single chapters.
%\includeonly{header,intro,background,appendix}

\begin{document}
\newpage

%Puts page numbering of preamble in roman and of main body of thesis in
%arabic. Also defines how chapters and sections are made
\pagenumbering{arabic}
\setcounter{page}{1} \pagestyle{fancy}
\renewcommand{\chaptermark}[1]{\markboth{\chaptername%
\ \thechapter:\,\ #1}{}}
\renewcommand{\sectionmark}[1]{\markright{\thesection\,\ #1}}

%DEFINES TITLE PAGE, and contains abstract, acknowledgements, etc.

\include{tex/header}

\newpage

%sets up headers for lefthand and righthand pages. To alter, edit
%these lines and the chaptermark/sectionmark lines above
\addtolength{\headheight}{3pt} \fancyhead{}
\fancyhead[LE]{\sl\leftmark} \fancyhead[LO,RE]{\rm\thepage}
\fancyhead[RO]{\sl\rightmark} \fancyfoot[C,L,E]{}
\pagenumbering{arabic}

%\singlespacing
%\doublespacing
\onehalfspacing
\input{tex/intro.tex}
\input{tex/background.tex}
\input{tex/methodology.tex}
\input{tex/result.tex}
\input{tex/conclusion.tex}
\appendix
\input{tex/appendix.tex}

%   this is for BibTeX.  remove if you plan to write the references in the document
\bibliographystyle{unsrt}
\bibliography{refs}


%adds the bibliography to the table of contents
\addcontentsline{toc}{chapter}
         {\protect\numberline{Bibliography\hspace{-96pt}}}

\end{document}