Repo for Sixth Sense IEEG Focality Paper

author: Ryan Gallagher

Getting Started

clone this repo
- can use VS Code, Github Desktop, or command line

git clone https://github.com/rgalls/Weighted_Distance.git [path_to_local]

install anaconda or miniconda
open terminal at main codebase folder, run:

conda env create -n ieegpy -f environment.yml

create code/config.json file by editing the example

Description of repo

/code stores all code
- /scripts stores python scripts that download/save/format/load raw data, organized in order
- /notebooks stores jupyter notebooks used for analysis
  - NormAtlas.ipynb formats the normative atlas data
  - Focality_IO_Data.ipynb analyzes bandpower and networks for patients
  - WeightedStandardDistance.ipynb completes the analysis of the paper
- /tools stores functions used throughout code base (c: Akash Pattnaik), reformatted to separate bandpower and coherence measures
/ieeg-metadata stores metadata associated with ieeg patients
/data stores the actual ieeg data and intermediaries used throughout analysis

Please contact the CNT or Ryan Gallagher for access to the data.