config.yaml

samples:
    test1:
        R1s: [sequence/A_S1_L001_R1_001.fastq.gz, ]
        R2s: [sequence/A_S1_L001_R2_001.fastq.gz, ]
        i5: S502
        i7: N701
    test2:
        R1s: [sequence/B_S2_L001_R1_001.fastq.gz, ]
        R2s: [sequence/B_S2_L001_R2_001.fastq.gz, ]
    test3:
        R1s: [sequence/C_S3_L001_R1_001.fastq.gz, ]
        R2s: [sequence/C_S3_L001_R2_001.fastq.gz, ]
    test4:
        R1s: [sequence/D_S4_L001_R1_001.fastq.gz, ]
        R2s: [sequence/D_S4_L001_R2_001.fastq.gz, ]
    test5:
        R1s: [sequence/E_S5_L001_R1_001.fastq.gz, ]
        R2s: [sequence/E_S5_L001_R2_001.fastq.gz, ]
    test6:
        R1s: [sequence/F_S6_L001_R1_001.fastq.gz, ]
        R2s: [sequence/F_S6_L001_R2_001.fastq.gz, ]
    test7:
        R1s: [sequence/G_S7_L001_R1_001.fastq.gz, ]
        R2s: [sequence/G_S7_L001_R2_001.fastq.gz, ]
    test8:
        R1s: [sequence/H_S8_L001_R1_001.fastq.gz, ]
        R2s: [sequence/H_S8_L001_R2_001.fastq.gz, ]
    test9:
        R1s: [sequence/I_S9_L001_R1_001.fastq.gz, ]
        R2s: [sequence/I_S9_L001_R2_001.fastq.gz, ]
    fake-Stalk:
        R1s: [sequence/A_S1_L001_R1_001.fastq.gz, sequence/C_S3_L001_R1_001.fastq.gz, sequence/E_S5_L001_R1_001.fastq.gz, sequence/G_S7_L001_R1_001.fastq.gz, ]
        R2s: [sequence/A_S1_L001_R2_001.fastq.gz, sequence/C_S3_L001_R2_001.fastq.gz, sequence/E_S5_L001_R2_001.fastq.gz, sequence/G_S7_L001_R2_001.fastq.gz, ]
    fake-Spore:
        R1s: [sequence/B_S2_L001_R1_001.fastq.gz, sequence/D_S4_L001_R1_001.fastq.gz, sequence/F_S6_L001_R1_001.fastq.gz, sequence/H_S8_L001_R1_001.fastq.gz,]
        R2s: [sequence/B_S2_L001_R2_001.fastq.gz, sequence/D_S4_L001_R2_001.fastq.gz, sequence/F_S6_L001_R2_001.fastq.gz, sequence/H_S8_L001_R2_001.fastq.gz,]

    miseq-Stalk:
        R1s: [sequence/Triparental/ERR2720963_1.fastq.gz, sequence/Triparental/ERR2720972_1.fastq.gz, sequence/Triparental/ERR2720973_1.fastq.gz]
        R2s: [sequence/Triparental/ERR2720963_2.fastq.gz, sequence/Triparental/ERR2720972_2.fastq.gz, sequence/Triparental/ERR2720973_2.fastq.gz]
    miseq-Spore:
        R1s: [sequence/Triparental/ERR2720963_1.fastq.gz, sequence/Triparental/ERR2720972_1.fastq.gz, sequence/Triparental/ERR2720973_1.fastq.gz]
        R2s: [sequence/Triparental/ERR2720963_2.fastq.gz, sequence/Triparental/ERR2720972_2.fastq.gz, sequence/Triparental/ERR2720973_2.fastq.gz]
    hiseq-Stalk:
        R1s: [sequence/Triparental/ERR2720965_1.fastq.gz, sequence/Triparental/ERR2720968_1.fastq.gz, sequence/Triparental/ERR2720969_1.fastq.gz, ]
        R2s: [sequence/Triparental/ERR2720965_2.fastq.gz, sequence/Triparental/ERR2720968_2.fastq.gz, sequence/Triparental/ERR2720969_2.fastq.gz, ]
    hiseq-Spore:
        R1s: [sequence/Triparental/ERR2720965_1.fastq.gz, sequence/Triparental/ERR2720968_1.fastq.gz, sequence/Triparental/ERR2720969_1.fastq.gz, ]
        R2s: [sequence/Triparental/ERR2720965_2.fastq.gz, sequence/Triparental/ERR2720968_2.fastq.gz, sequence/Triparental/ERR2720969_2.fastq.gz, ]


    P48-PB-F1-Stalk:
        i5: S502
        i7: N701
        Lane: "006"
    P48-PB-F1-Spore:
        i5: S502
        i7: N702
        Lane: "006"
    P48-PB-F2-Stalk:
        i5: S502
        i7: N703
        Lane: "006"
    P48-PB-F2-Spore:
        i5: S502
        i7: N704
        Lane: "006"
    P48-PC-F3-Stalk:
        i5: S503
        i7: N705
        Lane: "006"
    P48-PC-F3-Spore:
        i5: S503
        i7: N706
        Lane: "006"
    P48-PC-F4-Stalk:
        i5: S503
        i7: N707
        Lane: "006"
    P48-PC-F4-Spore:
        i5: S503
        i7: N710
        Lane: "006"
    P48-PD-F5-Stalk:
        i5: S505
        i7: N702
        Lane: "006"
    P48-PD-F5-Spore:
        i5: S505
        i7: N701
        Lane: "006"
    P48-PD-F6-Stalk:
        i5: S505
        i7: N704
        Lane: "006"
    P48-PD-F6-Spore:
        i5: S505
        i7: N703
        Lane: "006"
    P48-PF-F7-Stalk:
        i5: S506
        i7: N706
        Lane: "006"
    P48-PF-F7-Spore:
        i5: S506
        i7: N705
        Lane: "006"
    P48-PF-F8-Stalk:
        i5: S506
        i7: N710
        Lane: "006"
    P48-PF-F8-Spore:
        i5: S506
        i7: N707
        Lane: "006"

    P63-amp1-F02-Spore:
        i5: S508
        i7: N715
        AdmeraID: 18146FL-04-01-01
        Lane: "002"
    P63-amp1-F02-Stalk:
        i5: S507
        i7: N707
        AdmeraID: 18146FL-04-01-02
        Lane: "002"
    P63-amp1-F04-Spore:
        i5: S507
        i7: N715
        AdmeraID: 18146FL-04-01-03
        Lane: "002"
    P63-amp1-F04-Stalk:
        i5: S507
        i7: N712
        AdmeraID: 18146FL-04-01-04
        Lane: "002"
    P63-amp1-F06-Spore:
        i5: S510
        i7: N710
        AdmeraID: 18146FL-04-01-05
        Lane: "002"
    P63-amp1-F06-Stalk:
        i5: S505
        i7: N707
        AdmeraID: 18146FL-04-01-06
        Lane: "002"
    P63-carb1-F07-Spore:
        i5: S502
        i7: N715
        AdmeraID: 18146FL-04-01-07
        Lane: "002"
    P63-carb1-F07-Stalk:
        i5: S505
        i7: N710
        AdmeraID: 18146FL-04-01-08
        Lane: "002"
    P63-carb1-F08-Spore:
        i5: S503
        i7: N711
        AdmeraID: 18146FL-04-01-09
        Lane: "002"
    P63-carb1-F08-Stalk:
        i5: S503
        i7: N710
        AdmeraID: 18146FL-04-01-10
        Lane: "002"
    P63-carb1-F09-Spore:
        i5: S511
        i7: N715
        AdmeraID: 18146FL-04-01-11
        Lane: "002"
    P63-carb1-F09-Stalk:
        i5: S502
        i7: N710
        AdmeraID: 18146FL-04-01-12
        Lane: "002"
    P63-carb1-F12-Spore:
        i5: S508
        i7: N710
        AdmeraID: 18146FL-04-01-13
        Lane: "002"
    P63-carb1-F12-Stalk:
        i5: S511
        i7: N707
        AdmeraID: 18146FL-04-01-14
        Lane: "002"
    P63-amp2-F16-Spore:
        i5: S505
        i7: N715
        AdmeraID: 18146FL-04-01-15
        Lane: "002"
    P63-amp2-F16-Stalk:
        i5: S508
        i7: N711
        AdmeraID: 18146FL-04-01-16
        Lane: "002"
    P63-amp2-F17-Spore:
        i5: S508
        i7: N712
        AdmeraID: 18146FL-04-01-17
        Lane: "002"
    P63-amp2-F17-Stalk:
        i5: S503
        i7: N707
        AdmeraID: 18146FL-04-01-18
        Lane: "002"
    P63-amp2-F19-Spore:
        i5: S511
        i7: N710
        AdmeraID: 18146FL-04-01-19
        Lane: "002"
    P63-amp2-F19-Stalk:
        i5: S506
        i7: N711
        AdmeraID: 18146FL-04-01-20
        Lane: "002"
    P63-amp3-F24-Spore:
        i5: S511
        i7: N712
        AdmeraID: 18146FL-04-01-21
        Lane: "002"
    P63-amp3-F24-Stalk:
        i5: S502
        i7: N711
        AdmeraID: 18146FL-04-01-22
        Lane: "002"
    P63-amp3-F25-Spore:
        i5: S507
        i7: N714
        AdmeraID: 18146FL-04-01-23
        Lane: "002"
    P63-amp3-F25-Stalk:
        i5: S511
        i7: N711
        AdmeraID: 18146FL-04-01-24
        Lane: "002"
    P63-carb1-F-Spore:
        i5: S503
        i7: N712
        AdmeraID: 18146FL-04-01-25
        Lane: "002"
    P63-carb1-F-Stalk:
        i5: S506
        i7: N715
        AdmeraID: 18146FL-04-01-26
        Lane: "002"
    P63-amp2-F29-Spore:
        i5: S510
        i7: N712
        AdmeraID: 18146FL-04-01-27
        Lane: "002"
    P63-amp2-F29-Stalk:
        i5: S505
        i7: N711
        AdmeraID: 18146FL-04-01-28
        Lane: "002"
    P63-amp2-F31-Spore:
        i5: S503
        i7: N715
        AdmeraID: 18146FL-04-01-29
        Lane: "002"
    P63-amp2-F31-Stalk:
        i5: S508
        i7: N714
        AdmeraID: 18146FL-04-01-30
        Lane: "002"
    P63-amp2-F33-Spore:
        i5: S505
        i7: N712
        AdmeraID: 18146FL-04-01-31
        Lane: "002"
    P63-amp2-F33-Stalk:
        i5: S510
        i7: N714
        AdmeraID: 18146FL-04-01-32
        Lane: "002"
    P63-amp4-F38-Spore:
        i5: S503
        i7: N714
        AdmeraID: 18146FL-04-01-33
        Lane: "002"
    P63-amp4-F38-Stalk:
        i5: S505
        i7: N714
        AdmeraID: 18146FL-04-01-34
        Lane: "002"
    P63-amp4-F39-Spore:
        i5: S502
        i7: N712
        AdmeraID: 18146FL-04-01-35
        Lane: "002"
    P63-amp4-F39-Stalk:
        i5: S507
        i7: N710
        AdmeraID: 18146FL-04-01-36
        Lane: "002"
    P63-amp5-F42-Spore:
        i5: S511
        i7: N714
        AdmeraID: 18146FL-04-01-37
        Lane: "002"
    P63-amp5-F42-Stalk:
        i5: S506
        i7: N710
        AdmeraID: 18146FL-04-01-38
        Lane: "002"
    P63-amp5-F45-Spore:
        i5: S506
        i7: N712
        AdmeraID: 18146FL-04-01-39
        Lane: "002"
    P63-amp5-F45-Stalk:
        i5: S502
        i7: N707
        AdmeraID: 18146FL-04-01-40
        Lane: "002"
    P63-amp2-F14-Spore:
        i5: S506
        i7: N707
        AdmeraID: 18146FL-04-01-41
        Lane: "002"
    P63-amp2-F14-Stalk:
        i5: S510
        i7: N711
        AdmeraID: 18146FL-04-01-42
        Lane: "002"
    P63-amp4-F33-Spore:
        i5: S510
        i7: N707
        AdmeraID: 18146FL-04-01-43
        Lane: "002"
    P63-amp4-F33-Stalk:
        i5: S506
        i7: N714
        AdmeraID: 18146FL-04-01-44
        Lane: "002"
    P63-carb1-F11-Spore:
        i5: S508
        i7: N707
        AdmeraID: 18146FL-04-01-45
        Lane: "002"
    P63-carb1-F11-Stalk:
        i5: S510
        i7: N715
        AdmeraID: 18146FL-04-01-46
        Lane: "002"
    P63-amp5-F43-Spore:
        i5: S502
        i7: N714
        AdmeraID: 18146FL-04-01-47
        Lane: "002"
    P63-amp5-F43-Stalk:
        i5: S507
        i7: N711
        AdmeraID: 18146FL-04-01-48
        Lane: "002"

    Baym-F02-Stalk:
        i5: 'S502'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-01'
        Lane: '002'
    Baym-F11-Stalk:
        i5: 'S503'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-02'
        Lane: '002'
    Baym-F11-Spore:
        i5: 'S505'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-03'
        Lane: '002'
    Baym-F33-Stalk:
        i5: 'S506'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-04'
        Lane: '002'
    Baym-F02-Spore:
        i5: 'S507'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-05'
        Lane: '002'
    Baym-F12-Stalk:
        i5: 'S508'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-06'
        Lane: '002'
    Baym-F45-Stalk:
        i5: 'S510'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-07'
        Lane: '002'
    Baym-F19-Stalk:
        i5: 'S511'
        i7: 'N701'
        AdmeraID: '18146FL-07-01-08'
        Lane: '002'
    Baym-F00-Spore:
        i5: 'S502'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-09'
        Lane: '002'
    Baym-F12-Spore:
        i5: 'S503'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-10'
        Lane: '002'
    Baym-F07-Spore:
        i5: 'S505'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-11'
        Lane: '002'
    Baym-F45-Spore:
        i5: 'S506'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-12'
        Lane: '002'
    Baym-F33-Spore:
        i5: 'S507'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-13'
        Lane: '002'
    Baym-F00-Stalk:
        i5: 'S508'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-14'
        Lane: '002'
    Baym-F19-Spore:
        i5: 'S510'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-15'
        Lane: '002'
    Baym-F07-Stalk:
        i5: 'S511'
        i7: 'N702'
        AdmeraID: '18146FL-07-01-16'
        Lane: '002'
    BaymCool-F38-Stalk:
        i5: 'S502'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-17'
        Lane: '002'
    BaymCool-F08-Stalk:
        i5: 'S503'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-18'
        Lane: '002'
    BaymCool-F13-Stalk:
        i5: 'S505'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-19'
        Lane: '002'
    BaymCool-F34-Spore:
        i5: 'S506'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-20'
        Lane: '002'
    BaymCool-F14-Spore:
        i5: 'S507'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-21'
        Lane: '002'
    BaymCool-F24-Spore:
        i5: 'S508'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-22'
        Lane: '002'
    BaymCool-F24-Stalk:
        i5: 'S510'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-23'
        Lane: '002'
    BaymCool-F29-Stalk:
        i5: 'S511'
        i7: 'N703'
        AdmeraID: '18146FL-07-01-24'
        Lane: '002'
    BaymCool-F13-Spore:
        i5: 'S502'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-25'
        Lane: '002'
    BaymCool-F38-Spore:
        i5: 'S503'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-26'
        Lane: '002'
    BaymCool-F29-Spore:
        i5: 'S505'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-27'
        Lane: '002'
    BaymCool-F14-Stalk:
        i5: 'S506'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-28'
        Lane: '002'
    BaymCool-F08-Spore:
        i5: 'S507'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-29'
        Lane: '002'
    BaymCool-F04-Stalk:
        i5: 'S508'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-30'
        Lane: '002'
    BaymCool-F34-Stalk:
        i5: 'S510'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-31'
        Lane: '002'
    BaymCool-F04-Spore:
        i5: 'S511'
        i7: 'N704'
        AdmeraID: '18146FL-07-01-32'
        Lane: '002'
    BaymTMAC-F35-Spore:
        i5: 'S502'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-33'
        Lane: '002'
    BaymTMAC-F16-Spore:
        i5: 'S503'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-34'
        Lane: '002'
    BaymTMAC-F33-Stalk:
        i5: 'S505'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-35'
        Lane: '002'
    BaymTMAC-F31-Spore:
        i5: 'S506'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-36'
        Lane: '002'
    BaymTMAC-F37-Spore:
        i5: 'S507'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-37'
        Lane: '002'
    BaymTMAC-F33-Spore:
        i5: 'S508'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-38'
        Lane: '002'
    BaymTMAC-F18-Stalk:
        i5: 'S510'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-39'
        Lane: '002'
    BaymTMAC-F16-Stalk:
        i5: 'S511'
        i7: 'N705'
        AdmeraID: '18146FL-07-01-40'
        Lane: '002'
    BaymTMAC-F37-Stalk:
        i5: 'S502'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-41'
        Lane: '002'
    BaymTMAC-F10-Stalk:
        i5: 'S503'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-42'
        Lane: '002'
    BaymTMAC-F18-Spore:
        i5: 'S505'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-43'
        Lane: '002'
    BaymTMAC-F35-Stalk:
        i5: 'S506'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-44'
        Lane: '002'
    BaymTMAC-F06-Spore:
        i5: 'S507'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-45'
        Lane: '002'
    BaymTMAC-F06-Stalk:
        i5: 'S508'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-46'
        Lane: '002'
    BaymTMAC-F31-Stalk:
        i5: 'S510'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-47'
        Lane: '002'
    BaymTMAC-F10-Spore:
        i5: 'S511'
        i7: 'N706'
        AdmeraID: '18146FL-07-01-48'
        Lane: '002'
    BaymCoolTMAC-F39-Spore:
        i5: 'S502'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-49'
        Lane: '002'
    BaymCoolTMAC-F35-Stalk:
        i5: 'S503'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-50'
        Lane: '002'
    BaymCoolTMAC-F26-Spore:
        i5: 'S505'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-51'
        Lane: '002'
    BaymCoolTMAC-F09-Stalk:
        i5: 'S506'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-52'
        Lane: '002'
    BaymCoolTMAC-F42-Stalk:
        i5: 'S507'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-53'
        Lane: '002'
    BaymCoolTMAC-F39-Stalk:
        i5: 'S508'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-54'
        Lane: '002'
    BaymCoolTMAC-F43-Stalk:
        i5: 'S510'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-55'
        Lane: '002'
    BaymCoolTMAC-F17-Stalk:
        i5: 'S511'
        i7: 'N707'
        AdmeraID: '18146FL-07-01-56'
        Lane: '002'
    BaymCoolTMAC-F42-Spore:
        i5: 'S502'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-57'
        Lane: '002'
    BaymCoolTMAC-F25-Spore:
        i5: 'S503'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-58'
        Lane: '002'
    BaymCoolTMAC-F35-Spore:
        i5: 'S505'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-59'
        Lane: '002'
    BaymCoolTMAC-F17-Spore:
        i5: 'S506'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-60'
        Lane: '002'
    BaymCoolTMAC-F25-Stalk:
        i5: 'S507'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-61'
        Lane: '002'
    BaymCoolTMAC-F43-Spore:
        i5: 'S508'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-62'
        Lane: '002'
    BaymCoolTMAC-F26-Stalk:
        i5: 'S510'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-63'
        Lane: '002'
    BaymCoolTMAC-F09-Spore:
        i5: 'S511'
        i7: 'N710'
        AdmeraID: '18146FL-07-01-64'
        Lane: '002'
    NEXTFLEX-F09-Spore:
        i5: '1'
        i7: 'NEXTFLEX1'
        #i7Seq: 'ATCTAGCC'
        AdmeraID: '18146FL-07-01-65'
        Lane: '002'
    NEXTFLEX-F09-Stalk:
        i5: NEXTFLEX1
        i7: '2'
        #i7Seq: 'TATCTCTT'
        AdmeraID: '18146FL-07-01-66'
        Lane: '002'
    NEXTFLEX-F31-Spore:
        i5: NEXTFLEX1
        i7: '3'
        #i7Seq: 'TAGATGCC'
        AdmeraID: '18146FL-07-01-67'
        Lane: '002'
    NEXTFLEX-F31-Stalk:
        i5: NEXTFLEX1
        i7: '4'
        #i7Seq: 'CGCTCCTT'
        AdmeraID: '18146FL-07-01-68'
        Lane: '002'
    NEXTFLEX-F35-Spore:
        i5: NEXTFLEX1
        i7: '5'
        #i7Seq: CGAGCGCC
        AdmeraID: '18146FL-07-01-69'
        Lane: '002'
    NEXTFLEX-F35-Stalk:
        i5: NEXTFLEX1
        i7: '6'
        #i7Seq: 'TCGAGAGT'
        AdmeraID: '18146FL-07-01-70'
        Lane: '002'
    NEXTFLEX-F18-Spore:
        i5: NEXTFLEX1
        i7: '7'
        #i7Seq: 'GCTCGGCC'
        AdmeraID: '18146FL-07-01-71'
        Lane: '002'
    NEXTFLEX-F18-Stalk:
        i5: NEXTFLEX1
        i7: '8'
        #i7Seq: 'AGCTCAGT'
        AdmeraID: '18146FL-07-01-72'
        Lane: '002'

    GP2-F04-Spore:
        AdmeraID: '18146FL-09-01-01'
        Lane: '006'
        PlatePosition: 'A01'
    GP2-F02-Stalk:
        AdmeraID: '18146FL-09-01-02'
        Lane: '006'
        PlatePosition: 'A02'
    GP2-F49-Stalk:
        AdmeraID: '18146FL-09-01-03'
        Lane: '006'
        PlatePosition: 'A03'
    GP2-F18-Spore:
        AdmeraID: '18146FL-09-01-04'
        Lane: '006'
        PlatePosition: 'A04'
    GP2-F61-Spore:
        AdmeraID: '18146FL-09-01-05'
        Lane: '006'
        PlatePosition: 'A05'
    GP2-F38-Spore:
        AdmeraID: '18146FL-09-01-06'
        Lane: '006'
        PlatePosition: 'A06'
    GP2-F72-Stalk:
        AdmeraID: '18146FL-09-01-07'
        Lane: '006'
        PlatePosition: 'A07'
    GP2-F72-Spore:
        AdmeraID: '18146FL-09-01-08'
        Lane: '006'
        PlatePosition: 'A08'
    GP2-F21-Stalk:
        AdmeraID: '18146FL-09-01-09'
        Lane: '006'
        PlatePosition: 'A09'
    GP2-F96-Stalk:
        AdmeraID: '18146FL-09-01-10'
        Lane: '006'
        PlatePosition: 'A10'
    GP2-F89-Stalk:
        AdmeraID: '18146FL-09-01-11'
        Lane: '006'
        PlatePosition: 'A11'
    GP2-F66-Stalk:
        AdmeraID: '18146FL-09-01-12'
        Lane: '006'
        PlatePosition: 'A12'
    GP2-F04-Stalk:
        AdmeraID: '18146FL-09-01-13'
        Lane: '006'
        PlatePosition: 'B01'
    GP2-F97-Stalk:
        AdmeraID: '18146FL-09-01-14'
        Lane: '006'
        PlatePosition: 'B02'
    GP2-F34-Stalk:
        AdmeraID: '18146FL-09-01-15'
        Lane: '006'
        PlatePosition: 'B03'
    GP2-F89-Spore:
        AdmeraID: '18146FL-09-01-16'
        Lane: '006'
        PlatePosition: 'B04'
    GP2-F22-Stalk:
        AdmeraID: '18146FL-09-01-17'
        Lane: '006'
        PlatePosition: 'B05'
    GP2-F98-Spore:
        AdmeraID: '18146FL-09-01-18'
        Lane: '006'
        PlatePosition: 'B06'
    GP2-F35-Stalk:
        AdmeraID: '18146FL-09-01-19'
        Lane: '006'
        PlatePosition: 'B07'
    GP2-FP2-Stalk:
        AdmeraID: '18146FL-09-01-20'
        Lane: '006'
        PlatePosition: 'B08'
    GP2-F17-Spore:
        AdmeraID: '18146FL-09-01-21'
        Lane: '006'
        PlatePosition: 'B09'
    GP2-F02-Spore:
        AdmeraID: '18146FL-09-01-22'
        Lane: '006'
        PlatePosition: 'B10'
    GP2-F45-Spore:
        AdmeraID: '18146FL-09-01-23'
        Lane: '006'
        PlatePosition: 'B11'
    GP2-F52-Stalk:
        AdmeraID: '18146FL-09-01-24'
        Lane: '006'
        PlatePosition: 'B12'
    GP2-F38-Stalk:
        AdmeraID: '18146FL-09-01-25'
        Lane: '006'
        PlatePosition: 'C01'
    GP2-F78-Spore:
        AdmeraID: '18146FL-09-01-26'
        Lane: '006'
        PlatePosition: 'C02'
    GP2-F88-Spore:
        AdmeraID: '18146FL-09-01-27'
        Lane: '006'
        PlatePosition: 'C03'
    GP2-F40-Spore:
        AdmeraID: '18146FL-09-01-28'
        Lane: '006'
        PlatePosition: 'C04'
    GP2-F71-Stalk:
        AdmeraID: '18146FL-09-01-29'
        Lane: '006'
        PlatePosition: 'C05'
    GP2-F49-Spore:
        AdmeraID: '18146FL-09-01-30'
        Lane: '006'
        PlatePosition: 'C06'
    GP2-F21-Spore:
        AdmeraID: '18146FL-09-01-31'
        Lane: '006'
        PlatePosition: 'C07'
    GP2-F71-Spore:
        AdmeraID: '18146FL-09-01-32'
        Lane: '006'
        PlatePosition: 'C08'
    GP2-F77-Spore:
        AdmeraID: '18146FL-09-01-33'
        Lane: '006'
        PlatePosition: 'C09'
    GP2-F14-Stalk:
        AdmeraID: '18146FL-09-01-34'
        Lane: '006'
        PlatePosition: 'C10'
    GP2-F91-Spore:
        AdmeraID: '18146FL-09-01-35'
        Lane: '006'
        PlatePosition: 'C11'
    GP2-F19-Spore:
        AdmeraID: '18146FL-09-01-36'
        Lane: '006'
        PlatePosition: 'C12'
    GP2-F27-Stalk:
        AdmeraID: '18146FL-09-01-37'
        Lane: '006'
        PlatePosition: 'D01'
    GP2-F77-Stalk:
        AdmeraID: '18146FL-09-01-38'
        Lane: '006'
        PlatePosition: 'D02'
    GP2-FP3-Stalk:
        AdmeraID: '18146FL-09-01-39'
        Lane: '006'
        PlatePosition: 'D03'
    GP2-F32-Spore:
        AdmeraID: '18146FL-09-01-40'
        Lane: '006'
        PlatePosition: 'D04'
    GP2-F20-Stalk:
        AdmeraID: '18146FL-09-01-41'
        Lane: '006'
        PlatePosition: 'D05'
    GP2-F94-Stalk:
        AdmeraID: '18146FL-09-01-42'
        Lane: '006'
        PlatePosition: 'D06'
    GP2-F62-Spore:
        AdmeraID: '18146FL-09-01-43'
        Lane: '006'
        PlatePosition: 'D07'
    GP2-F90-Spore:
        AdmeraID: '18146FL-09-01-44'
        Lane: '006'
        PlatePosition: 'D08'
    GP2-F78-Stalk:
        AdmeraID: '18146FL-09-01-45'
        Lane: '006'
        PlatePosition: 'D09'
    GP2-F18-Stalk:
        AdmeraID: '18146FL-09-01-46'
        Lane: '006'
        PlatePosition: 'D10'
    GP2-F45-Stalk:
        AdmeraID: '18146FL-09-01-47'
        Lane: '006'
        PlatePosition: 'D11'
    GP2-F62-Stalk:
        AdmeraID: '18146FL-09-01-48'
        Lane: '006'
        PlatePosition: 'D12'
    GP2-F43-Stalk:
        AdmeraID: '18146FL-09-01-49'
        Lane: '006'
        PlatePosition: 'E01'
    GP2-F81-Stalk:
        AdmeraID: '18146FL-09-01-50'
        Lane: '006'
        PlatePosition: 'E02'
    GP2-F30-Stalk:
        AdmeraID: '18146FL-09-01-51'
        Lane: '006'
        PlatePosition: 'E03'
    GP2-F79-Spore:
        AdmeraID: '18146FL-09-01-52'
        Lane: '006'
        PlatePosition: 'E04'
    GP2-F19-Stalk:
        AdmeraID: '18146FL-09-01-53'
        Lane: '006'
        PlatePosition: 'E05'
    GP2-F66-Spore:
        AdmeraID: '18146FL-09-01-54'
        Lane: '006'
        PlatePosition: 'E06'
    GP2-F48-Stalk:
        AdmeraID: '18146FL-09-01-55'
        Lane: '006'
        PlatePosition: 'E07'
    GP2-F40-Stalk:
        AdmeraID: '18146FL-09-01-56'
        Lane: '006'
        PlatePosition: 'E08'
    GP2-F30-Spore:
        AdmeraID: '18146FL-09-01-57'
        Lane: '006'
        PlatePosition: 'E09'
    GP2-F27-Spore:
        AdmeraID: '18146FL-09-01-58'
        Lane: '006'
        PlatePosition: 'E10'
    GP2-F92-Spore:
        AdmeraID: '18146FL-09-01-59'
        Lane: '006'
        PlatePosition: 'E11'
    GP2-F90-Stalk:
        AdmeraID: '18146FL-09-01-60'
        Lane: '006'
        PlatePosition: 'E12'
    GP2-FP3-Spore:
        AdmeraID: '18146FL-09-01-61'
        Lane: '006'
        PlatePosition: 'F01'
    GP2-F28-Spore:
        AdmeraID: '18146FL-09-01-62'
        Lane: '006'
        PlatePosition: 'F02'
    GP2-F29-Spore:
        AdmeraID: '18146FL-09-01-63'
        Lane: '006'
        PlatePosition: 'F03'
    GP2-F94-Spore:
        AdmeraID: '18146FL-09-01-64'
        Lane: '006'
        PlatePosition: 'F04'
    GP2-F81-Spore:
        AdmeraID: '18146FL-09-01-65'
        Lane: '006'
        PlatePosition: 'F05'
    GP2-F96-Spore:
        AdmeraID: '18146FL-09-01-66'
        Lane: '006'
        PlatePosition: 'F06'
    GP2-F14-Spore:
        AdmeraID: '18146FL-09-01-67'
        Lane: '006'
        PlatePosition: 'F07'
    GP2-F91-Stalk:
        AdmeraID: '18146FL-09-01-68'
        Lane: '006'
        PlatePosition: 'F08'
    GP2-F16-Stalk:
        AdmeraID: '18146FL-09-01-69'
        Lane: '006'
        PlatePosition: 'F09'
    GP2-FP2-Spore:
        AdmeraID: '18146FL-09-01-70'
        Lane: '006'
        PlatePosition: 'F10'
    GP2-F17-Stalk:
        AdmeraID: '18146FL-09-01-71'
        Lane: '006'
        PlatePosition: 'F11'
    GP2-F79-Stalk:
        AdmeraID: '18146FL-09-01-72'
        Lane: '006'
        PlatePosition: 'F12'
    GP2-F88-Stalk:
        AdmeraID: '18146FL-09-01-73'
        Lane: '006'
        PlatePosition: 'G01'
    GP2-F52-Spore:
        AdmeraID: '18146FL-09-01-74'
        Lane: '006'
        PlatePosition: 'G02'
    GP2-F35-Spore:
        AdmeraID: '18146FL-09-01-75'
        Lane: '006'
        PlatePosition: 'G03'
    GP2-F97-Spore:
        AdmeraID: '18146FL-09-01-76'
        Lane: '006'
        PlatePosition: 'G04'
    GP2-F63-Spore:
        AdmeraID: '18146FL-09-01-77'
        Lane: '006'
        PlatePosition: 'G05'
    GP2-F28-Stalk:
        AdmeraID: '18146FL-09-01-78'
        Lane: '006'
        PlatePosition: 'G06'
    GP2-F92-Stalk:
        AdmeraID: '18146FL-09-01-79'
        Lane: '006'
        PlatePosition: 'G07'
    GP2-F32-Stalk:
        AdmeraID: '18146FL-09-01-80'
        Lane: '006'
        PlatePosition: 'G08'
    GP2-F29-Stalk:
        AdmeraID: '18146FL-09-01-81'
        Lane: '006'
        PlatePosition: 'G09'
    GP2-F26-Spore:
        AdmeraID: '18146FL-09-01-82'
        Lane: '006'
        PlatePosition: 'G10'
    GP2-F16-Spore:
        AdmeraID: '18146FL-09-01-83'
        Lane: '006'
        PlatePosition: 'G11'
    GP2-F46-Spore:
        AdmeraID: '18146FL-09-01-84'
        Lane: '006'
        PlatePosition: 'G12'
    GP2-F61-Stalk:
        AdmeraID: '18146FL-09-01-85'
        Lane: '006'
        PlatePosition: 'H01'
    GP2-F26-Stalk:
        AdmeraID: '18146FL-09-01-86'
        Lane: '006'
        PlatePosition: 'H02'
    GP2-F85-Spore:
        AdmeraID: '18146FL-09-01-87'
        Lane: '006'
        PlatePosition: 'H03'
    GP2-F22-Spore:
        AdmeraID: '18146FL-09-01-88'
        Lane: '006'
        PlatePosition: 'H04'
    GP2-F46-Stalk:
        AdmeraID: '18146FL-09-01-89'
        Lane: '006'
        PlatePosition: 'H05'
    GP2-F48-Spore:
        AdmeraID: '18146FL-09-01-90'
        Lane: '006'
        PlatePosition: 'H06'
    GP2-F43-Spore:
        AdmeraID: '18146FL-09-01-91'
        Lane: '006'
        PlatePosition: 'H07'
    GP2-F20-Spore:
        AdmeraID: '18146FL-09-01-92'
        Lane: '006'
        PlatePosition: 'H08'
    GP2-F63-Stalk:
        AdmeraID: '18146FL-09-01-93'
        Lane: '006'
        PlatePosition: 'H09'
    GP2-F34-Spore:
        AdmeraID: '18146FL-09-01-94'
        Lane: '006'
        PlatePosition: 'H10'
    GP2-F98-Stalk:
        AdmeraID: '18146FL-09-01-95'
        Lane: '006'
        PlatePosition: 'H11'
    GP2-F85-Stalk:
        AdmeraID: '18146FL-09-01-96'
        Lane: '006'
        PlatePosition: 'H12'
    GP3-F17-Spore:
        AdmeraID: "18146FL-11-01-02V1"
        Lane: "*"
    GP3-F17-Stalk:
        AdmeraID: "18146FL-11-01-06V1"
        Lane: "*"
    GP3-F18-Spore:
        AdmeraID: 18146FL-11-01-01V1
        Lane: "*"
    GP3-F18-Stalk:
        AdmeraID: 18146FL-11-01-05V1
        Lane: "*"
    GP3-F78-Spore:
        AdmeraID: 18146FL-11-01-03V1
        Lane: "*"
    GP3-F78-Stalk:
        AdmeraID: 18146FL-11-01-04V1
        Lane: "*"
    GP3-NF09-Spore:
        AdmeraID: 18146FL-11-01-07V1
        Lane: "*"
    GP3-NF09-Stalk:
        AdmeraID: 18146FL-11-01-08V1
        Lane: "*"
    GP3-NF18-Spore:
        AdmeraID: 18146FL-11-01-11V4
        Lane: "*"
    GP3-NF18-Stalk:
        AdmeraID: 18146FL-11-01-12V1
        Lane: "*"
    GP3-NF35-Spore:
        AdmeraID: 18146FL-11-01-09V1
        Lane: "*"
    GP3-NF35-Stalk:
        AdmeraID: 18146FL-11-01-10V1
        Lane: "*"

activesamples: [
    GP3-F17, GP3-F18, GP3-F78, GP3-NF09, GP3-NF18, GP3-NF35
    ]
    #GP2-F46,

inactivesamples: [
    GP2-F02, GP2-F04, GP2-F14, GP2-F16, GP2-F17, GP2-F18, GP2-F19, GP2-F20,
    GP2-F21, GP2-F22, GP2-F26, GP2-F27, GP2-F28, GP2-F29, GP2-F30, GP2-F32,
    GP2-F34, GP2-F35, GP2-F38, GP2-F40, GP2-F43, GP2-F45,  GP2-F48,
    GP2-F49, GP2-F52, GP2-F61, GP2-F62, GP2-F63, GP2-F66, GP2-F71, GP2-F72,
    GP2-F77, GP2-F78, GP2-F79, GP2-F81, GP2-F85, GP2-F88, GP2-F89, GP2-F90,
    GP2-F91, GP2-F92, GP2-F94, GP2-F96, GP2-F97, GP2-F98, 
    Baym-F00, Baym-F02, Baym-F07, Baym-F11, Baym-F19, Baym-F33, Baym-F45,
    BaymCool-F04, BaymCool-F08, BaymCool-F13, BaymCool-F14, BaymCool-F24,
    BaymCool-F29, BaymCool-F34, BaymCool-F38,
    BaymTMAC-F06, BaymTMAC-F10, BaymTMAC-F16, BaymTMAC-F18, BaymTMAC-F31,
    BaymTMAC-F33, BaymTMAC-F35, BaymTMAC-F37,
    BaymCoolTMAC-F09, BaymCoolTMAC-F17, BaymCoolTMAC-F25, BaymCoolTMAC-F26,
    BaymCoolTMAC-F35, BaymCoolTMAC-F39, BaymCoolTMAC-F42, BaymCoolTMAC-F43,
    NEXTFLEX-F09, NEXTFLEX-F18, NEXTFLEX-F31, NEXTFLEX-F35,

    P63-amp1-F02, P63-amp1-F04, P63-amp1-F06, P63-carb1-F07, P63-carb1-F08,
    P63-carb1-F09, P63-carb1-F12, P63-amp2-F16, P63-amp2-F17, P63-amp2-F19,
    P63-amp3-F24, P63-amp3-F25, P63-amp2-F29, P63-amp2-F31, P63-amp2-F33,
    P63-amp4-F38, P63-amp4-F39, P63-amp5-F42, P63-amp5-F45, P63-amp2-F14,
    P63-amp4-F33, P63-carb1-F11, P63-amp5-F43,

    P48-PB-F1, P48-PB-F2, P48-PC-F3, P48-PC-F4,
    P48-PD-F5, P48-PD-F6, P48-PF-F7, P48-PF-F8,
    
    GP2-FP2, GP2-FP3
]

nextflex_tmac: [
    GP2-F02, GP2-F04, GP2-F14, GP2-F16, GP2-F17, GP2-F18, GP2-F19, GP2-F20,
    GP2-F21, GP2-F22, GP2-F26, GP2-F27, GP2-F28, GP2-F29, GP2-F30, GP2-F32,
    GP2-F34, GP2-F35, GP2-F38, GP2-F40, GP2-F43, GP2-F45,  GP2-F48,
    GP2-F49, GP2-F52, GP2-F61, GP2-F62, GP2-F63, GP2-F66, GP2-F71, GP2-F72,
    GP2-F77, GP2-F78, GP2-F79, GP2-F81, GP2-F85, GP2-F88, GP2-F89, GP2-F90,
    GP2-F91, GP2-F92, GP2-F94, GP2-F96, GP2-F97, GP2-F98, GP2-FP2, GP2-FP3
    ]

round2: [
    P63-amp1-F02, P63-amp1-F04, P63-amp1-F06, P63-carb1-F07, P63-carb1-F08,
    P63-carb1-F09, P63-carb1-F12, P63-amp2-F16, P63-amp2-F17, P63-amp2-F19,
    P63-amp3-F24, P63-amp3-F25, P63-amp2-F29, P63-amp2-F31, P63-amp2-F33,
    P63-amp4-F38, P63-amp4-F39, P63-amp5-F42, P63-amp5-F45, P63-amp2-F14,
    P63-amp4-F33, P63-carb1-F11, P63-amp5-F43,
    ]

round1: [
    P48-PB-F1,
    P48-PB-F2,
    P48-PC-F3,
    P48-PC-F4,
    P48-PD-F5,
    P48-PD-F6,
    P48-PF-F7,
    P48-PF-F8,
    P63-carb1-F
    ]

neil: [fake]

miseq: [miseq]

hiseq: [hiseq]

nextera: [
    P63-amp1-F02, P63-amp1-F04, P63-amp1-F06, P63-carb1-F07, P63-carb1-F08,
    P63-carb1-F09, P63-carb1-F12, P63-amp2-F16, P63-amp2-F17, P63-amp2-F19,
    P63-amp3-F24, P63-amp3-F25, P63-amp2-F29, P63-amp2-F31, P63-amp2-F33,
    P63-amp4-F38, P63-amp4-F39, P63-amp5-F42, P63-amp5-F45, P63-amp2-F14,
    P63-amp4-F33, P63-carb1-F11, P63-amp5-F43,
]

baym_standard: [
    Baym-F00, Baym-F02, Baym-F07, Baym-F11, Baym-F19, Baym-F33, Baym-F45,
]

baym_cool: [
    BaymCool-F04, BaymCool-F08, BaymCool-F13, BaymCool-F14, BaymCool-F24,
    BaymCool-F29, BaymCool-F34, BaymCool-F38,
]

baym_tmac: [
    BaymTMAC-F06, BaymTMAC-F10, BaymTMAC-F16, BaymTMAC-F18, BaymTMAC-F31,
    BaymTMAC-F33, BaymTMAC-F35, BaymTMAC-F37,
]

baym_cool_tmac: [
    BaymCoolTMAC-F09, BaymCoolTMAC-F17, BaymCoolTMAC-F25, BaymCoolTMAC-F26,
    BaymCoolTMAC-F35, BaymCoolTMAC-F39, BaymCoolTMAC-F42, BaymCoolTMAC-F43,
]

nextflex: [
    NEXTFLEX-F09, NEXTFLEX-F18, NEXTFLEX-F31, NEXTFLEX-F35,
]

indexes:
    S502: ATAGAGAG
    S503: AGAGGATA
    S505: CTCCTTAC
    S506: TATGCAGT
    S507: TACTCCTT
    S508: AGGCTTAG
    S510: ATTAGACG
    S511: CGGAGAGA
    S513: CTAGTCGA
    S515: AGCTAGAA
    N701: CGTACTAG
    N702: TAAGGCGA
    N703: TCCTGAGC
    N704: AGGCAGAA
    N705: TAGGCATG
    N706: GGACTCCT
    N707: CGAGGCTG
    N710: CTCTCTAC
    N711: AAGAGGCA
    N712: GTAGAGGA
    N714: GCTCATGA
    N715: ATCTCAGG
    N716: ACTCGCTA
    "1": ATCTAGCC
    "2": TATCTCTT
    "3": TAGATGCC
    "4": CGCTCCTT
    "5": CGAGCGCC
    "6": TCGAGAGT
    "7": GCTCGGCC
    "8": AGCTCAGT
    NEXTFLEX1: AGATCTCG
    '???': '???'



flowersids: [01_109209, 01_1169436, 01_1470098, 01_1482177, 01_1512878,
01_1847425, 01_2914125, 01_3501237, 01_4599648, 02_2784310, 02_4220620,
02_4864806, 02_5365725, 02_7330652, 02_7810895, 02_8010560, 02_908732,
03_1082622, 03_1199706, 03_2039295, 03_2117715, 03_2251764, 03_3149812,
03_4008446, 03_429165, 03_837058, 04_1042404, 04_119823, 04_1198825,
04_1297807, 04_1337212, 04_1374302, 04_150021, 04_1610741, 04_1631401,
04_1636824, 04_1647993, 04_1669488, 04_1672491, 04_1680478, 04_1686197,
04_176414, 04_1800676, 04_183103, 04_189200, 04_2022705, 04_2029383,
04_2105363, 04_211298, 04_2118805, 04_2146408, 04_2182443, 04_2216469,
04_226460, 04_2277341, 04_2292341, 04_2305284, 04_2352523, 04_2364748,
04_2370381, 04_23729, 04_2379632, 04_2388958, 04_2395822, 04_2410459,
04_249021, 04_2583342, 04_2816999, 04_2839974, 04_2860820, 04_2866691,
04_2874408, 04_2901081, 04_2966059, 04_2969603, 04_299796, 04_3056005,
04_3095317, 04_3195961, 04_3207730, 04_3400701, 04_3418141, 04_3495472,
04_360162, 04_3603672, 04_3667772, 04_3672171, 04_368930, 04_3693951,
04_3702629, 04_3731537, 04_3753795, 04_3801667, 04_388853, 04_391184,
04_3998671, 04_4206544, 04_4251011, 04_4257696, 04_4296128, 04_4406451,
04_4592720, 04_4792313, 04_4897762, 04_497349, 04_5025649, 04_507400,
04_512025, 04_516880, 04_520805, 04_5230065, 04_5408480, 04_5413882, 04_554108,
04_574492, 04_593904, 04_609112, 04_848413, 04_909279, 04_97082, 05_2005419,
05_261457, 05_3028763, 05_4032643, 05_406981, 05_48862, 05_740164, 06_1079808,
06_1123079, 06_1554603, 06_1658187, 06_178127, 06_240614, 06_2763183,
06_2811725, 06_3036245, 06_3231175]