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Example filtering question from discussion with @sj39, What percentage of each reference had at least coverage depth 5?
We could offer a user set single absolute threshold (e.g. min depth 5 reads), a threshold relative to the max or mean (e.g at least half the mean coverage) - and then output an extra column?
Or to avoid complicating the UI, simply compute the fraction of each reference covered at some percentiles of the mean/max coverage? e.g. quartiles relative to the maximum coverage.
The text was updated successfully, but these errors were encountered:
Example filtering question from discussion with @sj39, What percentage of each reference had at least coverage depth 5?
We could offer a user set single absolute threshold (e.g. min depth 5 reads), a threshold relative to the max or mean (e.g at least half the mean coverage) - and then output an extra column?
Or to avoid complicating the UI, simply compute the fraction of each reference covered at some percentiles of the mean/max coverage? e.g. quartiles relative to the maximum coverage.
The text was updated successfully, but these errors were encountered: