apptainer.def

BootStrap: docker
From: r-base

# Image for running the tests in predict

%environment
	export R_LIBS_USER=~/R-packages

%post
	# Install dependencies
	apt-get update -y
	apt-get install curl -y
	Rscript -e "install.packages('iterators')"
	Rscript -e "install.packages('numDeriv')"
	Rscript -e "install.packages('pracma')"
	Rscript -e "install.packages('coda')"
	Rscript -e "install.packages('igraph')"
	Rscript -e "install.packages('rngtools')"
	Rscript -e "install.packages('foreach')"
	Rscript -e "install.packages('nimble')"
	Rscript -e "install.packages('khroma')"
	Rscript -e "install.packages('extraDistr')"
	Rscript -e "install.packages('doRNG')"
	Rscript -e "install.packages('doParallel')"

%runscript
    #!/bin/bash
	mkdir ~/R-packages
    echo $R_LIBS_USER
	Rscript -e "install.packages(pkgs=Sys.getenv('GITHUB_WORKSPACE'), repos=NULL)"
	Rscript -e "library("predict")"
	cd $GITHUB_WORKSPACE
	cd development/tests
	source ./tests.sh