-
Notifications
You must be signed in to change notification settings - Fork 2
/
setup.py
86 lines (67 loc) · 2.62 KB
/
setup.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
#!/usr/bin/env python
# How to build source distribution
# - python setup.py sdist --format bztar
# - python setup.py sdist --format gztar
# - python setup.py sdist --format zip
# - python setup.py bdist_wheel
import os
import sys
from setuptools import setup, find_packages
MAJOR = 0
MINOR = 8
MICRO = 2
VERSION = "{0}.{1}.{2}".format(MAJOR, MINOR, MICRO)
def check_python_version():
"""Checks the python version, exits if < 3.4."""
python_major, python_minor = sys.version_info[:2]
if python_major != 3 or python_minor < 4:
sys.stderr.write("geneparse requires python 3 "
"(version 3.4 or higher)\n")
sys.exit(1)
def write_version_file(fn=None):
if fn is None:
fn = os.path.join(
os.path.dirname(os.path.abspath(__file__)),
os.path.join("geneparse", "version.py"),
)
content = ("\n# THIS FILE WAS GENERATED AUTOMATICALLY\n"
'geneparse_version = "{version}"\n')
a = open(fn, "w")
try:
a.write(content.format(version=VERSION))
finally:
a.close()
def setup_package():
# Checking the python version prior to installation
check_python_version()
# Saving the version into a file
write_version_file()
setup(
name="geneparse",
version=VERSION,
description="A suite of parse for genotype formats.",
url="https://github.com/pgxcentre/geneparse",
license="MIT",
test_suite="geneparse.tests.test_suite",
zip_safe=False,
install_requires=["numpy >= 1.11.0", "pandas >= 0.19.0",
"pyplink >= 1.3.4", "setuptools >= 26.1.0",
"biopython >= 1.68", "pybgen >= 0.7.0"],
packages=find_packages(),
package_data={"geneparse.tests": ["data/*", "data/*/*"]},
classifiers=["Development Status :: 4 - Beta",
"Intended Audience :: Science/Research",
"License :: Free for non-commercial use",
"Operating System :: Unix",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft",
"Programming Language :: Python",
"Programming Language :: Python :: 3.4",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Topic :: Scientific/Engineering :: Bio-Informatics"],
keywords="bioinformatics genetics statistics",
)
if __name__ == "__main__":
setup_package()