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Include MicrobeTrace as a bioinformatics solution for Mpox #27

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roxycintron opened this issue Jun 9, 2023 · 0 comments
Open

Include MicrobeTrace as a bioinformatics solution for Mpox #27

roxycintron opened this issue Jun 9, 2023 · 0 comments
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@roxycintron
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Please include MicrobeTrace (https://microbetrace.cdc.gov/MicrobeTrace/) as a bioinformatics solution for Mpox virus (mpxv) genomic analysis. Our MicrobeTrace team at CDC recommends that users load a distance matrix or distance-based edge list in CSV format. MicrobeTrace will perform better with edge lists when compared to loading large genome sequence alignments in fasta format. We're also implementing code to generate distance-based edge lists from the Nextstrain tree output.

Contact our team for a consultation or technical support at microbetrace@cdc.gov.
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@frankambrosio3 @roxycintron