setup.py

# #!/usr/bin/env python
# """
# Pygr
# ====
# 
# Pygr is an open source software project used to develop graph database 
# interfaces for the popular Python language, with a strong emphasis 
# on bioinformatics applications ranging from genome-wide analysis of 
# alternative splicing patterns, to comparative genomics queries of 
# multi-genome alignment data.
# """
# 
# import os, sys, stat
# from shutil import copyfile
# from distutils.core import setup, Extension
# from distutils.command.build import build
# 
# def error(msg):
#     "Fatal errors"
#     print( '*** error %s' % msg )
#     sys.exit()
# 
# import pygr
# 
# PYGR_NAME = "pygr"
# PYGR_VERSION = pygr.__version__
# 
# if sys.version_info < (2, 3):
#     error( 'pygr requires python 2.3 or higher' )
# 
# CLASSIFIERS = """
# Development Status :: 5 - Production/Stable
# Operating System :: MacOS :: MacOS X
# Operating System :: Microsoft :: Windows :: Windows NT/2000
# Operating System :: OS Independent
# Operating System :: POSIX
# Operating System :: POSIX :: Linux
# Operating System :: Unix
# Programming Language :: Python
# Topic :: Scientific/Engineering
# Topic :: Scientific/Engineering :: Bioinformatics
# """
# 
# # split into lines and filter empty ones
# CLASSIFIERS = filter(None, CLASSIFIERS.splitlines() )
# 
# # if pyrex is not present try compiling the C files
# try:
#     from Pyrex.Compiler.Version import version as PYREX_VERSION
#     from Pyrex.Distutils import build_ext
#     if PYREX_VERSION < "0.9.8":
#         error ( "pyrex version >=0.9.8 required, found %s" % PYREX_VERSION )
#     ext = 'pyx'
#     cmdclass = { 'build_ext': build_ext }
# except ImportError, exc:
#     ext = 'c'
#     cmdclass = {}
# 
# # extension sources 
# seqfmt_src = [ 'pygr/seqfmt.%s' % ext ]
# cdict_src  = [ 'pygr/cgraph.c', 'pygr/cdict.%s' % ext ]
# nested_src = [ 'pygr/intervaldb.c', 'pygr/cnestedlist.%s' % ext, 'pygr/apps/maf2nclist.c' ]
# 
# def main():
#     setup(
#         name = PYGR_NAME ,
#         version= PYGR_VERSION,
#         description = __doc__,
#         author = "Christopher Lee",
#         author_email='leec@chem.ucla.edu',
#         url = 'http://sourceforge.net/projects/pygr',
#         classifiers = CLASSIFIERS,
# 
#         packages = [ 'pygr', 'pygr.apps' ],
# 
#         ext_modules = [
#             Extension( 'pygr.seqfmt', seqfmt_src ),
#             Extension( 'pygr.cdict',  cdict_src ),
#             Extension( 'pygr.cnestedlist', nested_src), 
#         ],
# 
#         cmdclass = cmdclass,
#      )
# 
# if __name__ == '__main__':
#     main()