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Project template

Projects using pkgpl_base docker images.

Requirements

Docker Setting

In docker directory, add additional packages you need to Dockerfile. Set PROJECT_NAME and DEVICE in Env.sh and run following commands.

./build.sh    # docker build
./run.sh      # docker run
./exec.sh -h  # docker exec
./helper.sh   # docker images, ps, stop, rmi

Directories

Directory structure from Good enough practices in scientific computing.

  • bin: put external scripts or compiled programs
  • data: put raw data and metadata
  • doc: put text documents associated with the project
  • results: put files generated during cleanup and analysis
  • src: put project source code

Directories above will be mounted in the docker container.

  • path:/home/$USER/$RPOJECT_DIR/
  • link:/work/$USER/$PROJECT_DIR/

Example projects