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HMM Beam Search Segfaults if no reference haplotypes are found #27

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hguturu opened this issue Jan 28, 2020 · 0 comments
Open

HMM Beam Search Segfaults if no reference haplotypes are found #27

hguturu opened this issue Jan 28, 2020 · 0 comments

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@hguturu
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hguturu commented Jan 28, 2020

Eagle/src/Eagle.cpp

Lines 2694 to 2695 in 10fe822

finalHapPairs[Mseg64-1] = curStates[0].from;
bestPathScores[Mseg64-1] = curStates[0].score;

This can happen if the input set is very small (e.g. <50 samples). Likely not a great case to use EagleV1, but segfault is not ideal.
@hguturu hguturu changed the title HMM Beam Search Segfaults if not reference haplotypes are found HMM Beam Search Segfaults if no reference haplotypes are found Jan 28, 2020
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@hguturu