From 75bf3d74ffa7f3148aab38a382ec05f501e3805a Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Mon, 20 May 2024 09:25:21 +0100
Subject: [PATCH 1/3] Bump version number to 5.6.4.

---
 pom.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pom.xml b/pom.xml
index cee8b07..613d607 100644
--- a/pom.xml
+++ b/pom.xml
@@ -7,14 +7,14 @@
     <groupId>edu.stanford.protege</groupId>
     <artifactId>protege-distribution</artifactId>
     <packaging>pom</packaging>
-    <version>5.6.3</version>
+    <version>5.6.4</version>
 
     <properties>
         <!--
         The version of Protege that we are targeting.  We set this to our project version.  The two should be in sync.
         Note that we declare the oss-sonatype snapshot repository so that we can work with snapshots.
         -->
-        <protege.version>5.6.3</protege.version>
+        <protege.version>5.6.4</protege.version>
 
         <!--
         The directory name for a distribution.  This is the directory that a user copies to the location

From 3ed71d4cf414b1aa47c63158ab2dcef2d581c24b Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Mon, 20 May 2024 09:34:29 +0100
Subject: [PATCH 2/3] Update Maven plugins.

Use latest versions of the Maven assembly and dependency plugins. Also
add the Maven enforcer plugin.
---
 pom.xml | 41 +++++++++++++++++++++++++++++++++++------
 1 file changed, 35 insertions(+), 6 deletions(-)

diff --git a/pom.xml b/pom.xml
index 613d607..05c4c79 100644
--- a/pom.xml
+++ b/pom.xml
@@ -204,10 +204,31 @@
     <build>
         <plugins>
 
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-enforcer-plugin</artifactId>
+                <version>3.4.1</version>
+                <executions>
+                    <execution>
+                        <id>enforce-maven-version</id>
+                        <goals>
+                            <goal>enforce</goal>
+                        </goals>
+                        <configuration>
+                            <rules>
+                                <requireMavenVersion>
+                                    <version>3.6.3</version>
+                                </requireMavenVersion>
+                            </rules>
+                        </configuration>
+                    </execution>
+                </executions>
+            </plugin>
+
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-dependency-plugin</artifactId>
-                <version>2.10</version>
+                <version>3.6.1</version>
                 <executions>
 
                     <!-- OS X -->
@@ -370,7 +391,7 @@
             <!-- Assembly plugin to produce archives for various platforms and the platform independent version -->
             <plugin>
                 <artifactId>maven-assembly-plugin</artifactId>
-                <version>2.5.3</version>
+                <version>3.7.1</version>
                 <configuration>
                     <finalName>${protege.directory}</finalName>
                 </configuration>
@@ -382,7 +403,9 @@
                             <goal>single</goal>
                         </goals>
                         <configuration>
-                            <descriptor>src/main/resources/os-x-assembly.xml</descriptor>
+                            <descriptors>
+                                <descriptor>src/main/resources/os-x-assembly.xml</descriptor>
+                            </descriptors>
                         </configuration>
                     </execution>
                     <execution>
@@ -392,7 +415,9 @@
                             <goal>single</goal>
                         </goals>
                         <configuration>
-                            <descriptor>src/main/resources/linux-assembly.xml</descriptor>
+                            <descriptors>
+                                <descriptor>src/main/resources/linux-assembly.xml</descriptor>
+                            </descriptors>
                         </configuration>
                     </execution>
                     <execution>
@@ -402,7 +427,9 @@
                             <goal>single</goal>
                         </goals>
                         <configuration>
-                            <descriptor>src/main/resources/win-assembly.xml</descriptor>
+                            <descriptors>
+                                <descriptor>src/main/resources/win-assembly.xml</descriptor>
+                            </descriptors>
                         </configuration>
                     </execution>
                     <execution>
@@ -412,7 +439,9 @@
                             <goal>single</goal>
                         </goals>
                         <configuration>
-                            <descriptor>src/main/resources/platform-independent-assembly.xml</descriptor>
+                            <descriptors>
+                                <descriptor>src/main/resources/platform-independent-assembly.xml</descriptor>
+                            </descriptors>
                         </configuration>
                     </execution>
                 </executions>

From 9b60a4a3c8cafb88ae796c9ba187a252c5d23bfb Mon Sep 17 00:00:00 2001
From: Damien Goutte-Gattat <dpg44@cam.ac.uk>
Date: Mon, 20 May 2024 09:43:21 +0100
Subject: [PATCH 3/3] Update the ELK reasoner plugin.

Use the latest release (0.6.0) of the ELK plugin, from its new
io.github.liveontologies location.
---
 pom.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pom.xml b/pom.xml
index 05c4c79..a36ed74 100644
--- a/pom.xml
+++ b/pom.xml
@@ -186,9 +186,9 @@
         </dependency>
 
         <dependency>
-            <groupId>au.csiro</groupId>
+            <groupId>io.github.liveontologies</groupId>
             <artifactId>elk-protege</artifactId>
-            <version>0.5.0</version>
+            <version>0.6.0</version>
         </dependency>
 
         <dependency>