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Add option to disable_dependencies for cache #477

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merged 2 commits into from
Nov 6, 2024

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jan-janssen
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@jan-janssen jan-janssen commented Nov 6, 2024

Summary by CodeRabbit

  • New Features

    • Introduced a disable_dependencies parameter to the Executor and FileExecutor classes, allowing users to control dependency resolution during task submission.
    • Enhanced the execute_tasks_h5 function to handle task execution with or without dependencies.
  • Bug Fixes

    • Added error handling to raise a ValueError when tasks with dependencies are submitted while disable_dependencies is set to True.
  • Tests

    • Added a new test case to ensure proper error handling when submitting tasks with dependencies disabled.

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coderabbitai bot commented Nov 6, 2024

Walkthrough

The changes in this pull request introduce a new boolean parameter, disable_dependencies, across multiple components of the executor library. This parameter allows users to control whether dependency resolution occurs during task submission. Modifications were made to the Executor class, FileExecutor class, and the execute_tasks_h5 function, ensuring that the logic for handling dependencies is adjusted accordingly. Additionally, a new test case was added to verify the correct behavior when dependencies are disabled.

Changes

File Change Summary
executorlib/__init__.py Added disable_dependencies parameter to the __new__ method of the Executor class, affecting dependency resolution logic.
executorlib/cache/executor.py Introduced disable_dependencies parameter in FileExecutor's __init__ method and create_file_executor function, allowing control over dependency resolution during task execution.
executorlib/cache/shared.py Added disable_dependencies parameter to execute_tasks_h5 function, modifying control flow to raise a ValueError if future wait keys are present when dependencies are disabled.
tests/test_cache_executor_serial.py Added test_executor_dependence_error method to verify that a ValueError is raised when submitting a task with dependencies disabled while attempting to use a future as an argument.

Possibly related PRs

  • Cache: Use explicit arguments for serialize_funct_h5() #448: The changes in this PR involve adding a disable_dependencies parameter to the FileExecutor class, which is directly related to the modifications made in the main PR that also introduced the disable_dependencies parameter in the Executor class.

  • Implement resource_dict for file executor #456: This PR implements a resource_dict for the FileExecutor, which aligns with the changes in the main PR that enhance the Executor class's functionality by adding a disable_dependencies parameter, indicating a broader context of resource management.

  • Cache: create method #459: The introduction of a create_file_executor function in this PR relates to the changes in the main PR as both involve enhancements to the executor's functionality and resource management.

  • Disable Block Allocation by default #473: This PR modifies the default behavior of the block_allocation parameter in the Executor class, which is relevant to the changes in the main PR that also involve modifications to the Executor class's parameters and behavior.

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@jan-janssen jan-janssen linked an issue Nov 6, 2024 that may be closed by this pull request
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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (8)
executorlib/cache/executor.py (2)

35-35: Enhance parameter documentation for clarity.

While the parameter addition is well-structured, the documentation could be more descriptive about the implications of disabling dependencies.

Consider expanding the documentation to:

-    disable_dependencies (boolean): Disable resolving future objects during the submission.
+    disable_dependencies (boolean): When True, disables resolving of future objects during task submission. 
+        This can improve performance when tasks are independent but will raise ValueError if futures are used as arguments.

Also applies to: 49-49


95-95: Consider using a configuration object pattern.

The function signature is getting quite long with 13 parameters. While the parameter addition is correct, consider refactoring to use a configuration object pattern for better maintainability.

Example approach:

@dataclass
class FileExecutorConfig:
    max_workers: int = 1
    backend: str = "pysqa_flux"
    max_cores: int = 1
    cache_directory: Optional[str] = None
    resource_dict: Optional[dict] = None
    flux_executor: Any = None
    flux_executor_pmi_mode: Optional[str] = None
    flux_executor_nesting: bool = False
    pysqa_config_directory: Optional[str] = None
    hostname_localhost: Optional[bool] = None
    block_allocation: bool = False
    init_function: Optional[callable] = None
    disable_dependencies: bool = False

def create_file_executor(config: FileExecutorConfig) -> FileExecutor:
    if config.cache_directory is None:
        config.cache_directory = "executorlib_cache"
    # ... rest of the validation logic ...
    return FileExecutor(
        cache_directory=config.cache_directory,
        resource_dict=config.resource_dict,
        pysqa_config_directory=config.pysqa_config_directory,
        backend=config.backend.split("pysqa_")[-1],
        disable_dependencies=config.disable_dependencies,
    )

Also applies to: 117-117

tests/test_cache_executor_serial.py (2)

49-54: LGTM! Consider simplifying the with statements.

The test correctly verifies that attempting to use futures as arguments when dependencies are disabled raises a ValueError.

Consider combining the nested with statements for better readability:

-        with self.assertRaises(ValueError):
-            with FileExecutor(
-                execute_function=execute_in_subprocess, disable_dependencies=True
-            ) as exe:
-                exe.submit(my_funct, 1, b=exe.submit(my_funct, 1, b=2))
+        with self.assertRaises(ValueError), FileExecutor(
+            execute_function=execute_in_subprocess, disable_dependencies=True
+        ) as exe:
+            exe.submit(my_funct, 1, b=exe.submit(my_funct, 1, b=2))
🧰 Tools
🪛 Ruff

50-53: Use a single with statement with multiple contexts instead of nested with statements

Combine with statements

(SIM117)


49-54: Consider adding more test cases for comprehensive coverage.

While the current test verifies the error case, consider adding tests for:

  1. Success case with disable_dependencies=False (baseline)
  2. Different variations of dependency usage (args vs kwargs)
  3. Edge cases like None values or empty futures

Would you like me to help generate these additional test cases?

🧰 Tools
🪛 Ruff

50-53: Use a single with statement with multiple contexts instead of nested with statements

Combine with statements

(SIM117)

executorlib/cache/shared.py (1)

120-123: Consider enhancing error handling

The error handling could be improved in two ways:

  1. Move the future validation earlier in the function to fail fast before any processing
  2. Provide more context in the error message about what the user should do instead

Consider this enhancement:

-            raise ValueError(
-                "Future objects are not supported as input if disable_dependencies=True."
-            )
+            raise ValueError(
+                "Future objects detected in input but dependencies are disabled. "
+                "Either enable dependencies by setting disable_dependencies=False "
+                "or ensure all inputs are concrete values instead of futures."
+            )
executorlib/__init__.py (3)

197-198: Consider moving disable_dependencies parameter closer to related parameters.

For better readability and maintainability, consider grouping the disable_dependencies parameter with other control flow parameters like block_allocation and init_function.


Line range hint 41-42: Enhance documentation with examples and impact.

While the documentation clearly states the purpose of disable_dependencies, it would be helpful to:

  1. Add examples showing usage with and without dependencies
  2. Document the impact on dependency resolution
  3. Explain when users should consider disabling dependencies

Consider adding examples like:

# With dependencies (default)
with Executor() as executor:
    future1 = executor.submit(task1)
    # future1 can be used as input to task2
    future2 = executor.submit(task2, future1)

# With dependencies disabled
with Executor(disable_dependencies=True) as executor:
    # Direct values must be used, futures as inputs will raise ValueError
    result1 = executor.submit(task1).result()
    result2 = executor.submit(task2, result1)

Also applies to: 90-91


Based on the validation function implementations, I can now provide the final response:

Validation checks need to be moved before the branching logic

The current validation implementation reveals that:

  1. check_refresh_rate raises an error if refresh_rate is not 0.01, which is only valid when dependencies are disabled
  2. check_plot_dependency_graph raises an error if plot_dependency_graph is True, which is only valid when dependencies are disabled
  3. check_pysqa_config_directory raises an error if pysqa_config_directory is not None, which is only valid for non-pysqa backends

The validation checks should be moved before the branching logic since:

  • These parameters are mutually exclusive with certain execution modes
  • Early validation provides clearer error messages
  • Reduces code duplication
def create_executor_from_config(
    disable_dependencies: bool = False,
    ...
) -> Union[ExecutorBase, ExecutorWithDependencies]:
    if backend != "pysqa":
        _check_pysqa_config_directory(pysqa_config_directory=pysqa_config_directory)
    
    if disable_dependencies:
        _check_plot_dependency_graph(plot_dependency_graph=plot_dependency_graph)
        _check_refresh_rate(refresh_rate=refresh_rate)
        
    if backend == "pysqa":
        return ExecutorPySQA(...)
    elif not disable_dependencies:
        return ExecutorWithDependencies(...)
    else:
        return create_executor(...)
🔗 Analysis chain

Line range hint 199-238: Review and refactor validation checks.

There are several concerns with the current validation logic:

  1. _check_pysqa_config_directory is redundantly called in both branches when disable_dependencies is True
  2. _check_plot_dependency_graph and _check_refresh_rate are only called in the last branch
  3. The behavior differences between branches need verification

Consider refactoring the validation checks:

        elif not disable_dependencies:
-           _check_pysqa_config_directory(pysqa_config_directory=pysqa_config_directory)
            return ExecutorWithDependencies(
                # ... parameters ...
            )
        else:
+           # Common validations
            _check_pysqa_config_directory(pysqa_config_directory=pysqa_config_directory)
            _check_plot_dependency_graph(plot_dependency_graph=plot_dependency_graph)
            _check_refresh_rate(refresh_rate=refresh_rate)
            return create_executor(
                # ... parameters ...
            )

Let's verify the behavior differences between branches:


Let me gather more information about the validation functions and their implementations.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Analyze the differences in validation and execution paths

# Check validation functions implementation
echo "Checking validation function implementations:"
rg -A 5 "_check_p(lot_dependency_graph|ysqa_config_directory|refresh_rate)"

# Check ExecutorWithDependencies vs create_executor differences
echo "Checking executor implementations:"
rg -A 10 "class ExecutorWithDependencies|def create_executor"

Length of output: 4254


Script:

#!/bin/bash
# Check the actual implementation of validation functions
echo "Checking validation function implementations:"
rg -A 10 "def check_(plot_dependency_graph|pysqa_config_directory|refresh_rate)" executorlib/standalone/inputcheck.py

# Check if ExecutorWithDependencies uses these parameters
echo "Checking ExecutorWithDependencies parameter usage:"
ast-grep --pattern 'class ExecutorWithDependencies {
  $$$
  def __init__($$$) {
    $$$
  }
  $$$
}'

Length of output: 1531

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 2922242 and 44afd9c.

📒 Files selected for processing (4)
  • executorlib/__init__.py (1 hunks)
  • executorlib/cache/executor.py (5 hunks)
  • executorlib/cache/shared.py (2 hunks)
  • tests/test_cache_executor_serial.py (1 hunks)
🧰 Additional context used
🪛 Ruff
tests/test_cache_executor_serial.py

50-53: Use a single with statement with multiple contexts instead of nested with statements

Combine with statements

(SIM117)

🔇 Additional comments (6)
executorlib/cache/executor.py (2)

76-78: LGTM! Parameter propagation is correct.

The disable_dependencies parameter is properly passed through to the execute_tasks_h5 function.


35-35: Verify consistent parameter usage across the codebase.

Let's verify that the disable_dependencies parameter is consistently implemented across all related components.

Also applies to: 76-76, 95-95

✅ Verification successful

Let me check the actual implementation and usage of disable_dependencies to ensure consistency.


Based on the search results, I can now generate a final response as I have sufficient information about the implementation and usage of disable_dependencies.

Parameter implementation is consistent across the codebase

The disable_dependencies parameter is properly implemented and used consistently:

  • It's well-documented in executorlib/__init__.py with clear purpose and behavior
  • Correctly propagated through the executor chain in executorlib/cache/executor.py
  • Proper validation and error handling in executorlib/cache/shared.py when future objects are used with disable_dependencies=True
  • Test coverage exists in multiple test files showing both enabled and disabled states
  • Appropriate warning messages in executorlib/standalone/inputcheck.py for parameter conflicts
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for consistent implementation of disable_dependencies parameter

# Check for the parameter in related files
echo "Checking for disable_dependencies parameter usage:"
rg -l "disable_dependencies" 

# Check for potential missing implementations
echo -e "\nChecking for executor-related files that might need the parameter:"
fd -e py -x grep -l "executor" {} \; | grep -i "executor"

Length of output: 1663


Script:

#!/bin/bash
# Check the actual implementation and usage of disable_dependencies parameter

# Check function signatures and parameter usage
echo "Checking function signatures and parameter usage:"
rg -A 5 "disable_dependencies" 

# Check specific executor class implementations
echo -e "\nChecking executor class implementations:"
ast-grep --pattern 'class $_ {
  $$$
  def __init__($$$, disable_dependencies$$$) {
    $$$
  }
  $$$
}'

Length of output: 9498

executorlib/cache/shared.py (3)

57-57: LGTM: Well-structured parameter addition

The new parameter is properly typed, has a sensible default value for backward compatibility, and follows Python's parameter ordering conventions.


115-124: LGTM: Clean implementation of dependency control

The implementation correctly handles both cases:

  • When dependencies are enabled: maintains original behavior
  • When dependencies are disabled: prevents future usage and sets empty dependency list

57-57: Verify integration and test coverage

The addition of disable_dependencies is a significant change to the task execution logic. Let's verify its integration and test coverage.

Also applies to: 115-124

✅ Verification successful

Let me gather more context about the implementation and test coverage.


Based on the gathered context, I can now provide the final response:

The disable_dependencies parameter is properly integrated and tested

The implementation is well-integrated across the codebase with:

  • Clear documentation in executorlib/__init__.py
  • Proper implementation in executorlib/cache/shared.py with appropriate error handling
  • Test coverage in multiple test files:
    • tests/test_cache_executor_serial.py: Tests error cases with futures
    • tests/test_executor_backend_mpi_noblock.py: Tests both enabled and disabled states

The parameter is used consistently and has appropriate validation checks in inputcheck.py for related parameters like refresh_rate and plot_dependency_graph.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check integration points and test coverage

# Test 1: Verify all callers of execute_tasks_h5 are updated
echo "Checking callers of execute_tasks_h5:"
rg "execute_tasks_h5\(" --type py

# Test 2: Verify test coverage
echo -e "\nChecking test coverage for disable_dependencies:"
rg "disable_dependencies.*=.*True" --type py

Length of output: 664


Script:

#!/bin/bash
# Check the implementation details and test coverage

# Look for the implementation details around disable_dependencies
echo "Implementation context:"
rg -B 2 -A 4 "disable_dependencies" --type py

# Check test assertions and scenarios
echo -e "\nTest assertions:"
rg "assert.*disable_dependencies" --type py

Length of output: 9634

executorlib/__init__.py (1)

Line range hint 40-41: LGTM: Parameter addition is consistent and well-documented.

The disable_dependencies parameter is correctly added to both __init__ and __new__ methods with appropriate type annotation and a safe default value of False.

Also applies to: 89-90

@jan-janssen jan-janssen merged commit d85a615 into main Nov 6, 2024
26 checks passed
@jan-janssen jan-janssen deleted the cache_disable_dependencies branch November 6, 2024 16:45
This was referenced Nov 14, 2024
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[feature] Add option to disable dependency check
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