EXAMPLE_cluster_singularity_slurm_remap_non_redundant.json

{
	"__default__":
	{
		"project-name":"TMTC",
		"job-name" : "{rule}",
		"partition" : "queue_name",
		"node" : "1",
		"thread" : "1",
		"ntasks" : "1",
		"time" : "2:30:00",
		"memory" : "5G",
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.tf}_slurm.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.tf}_slurm.err",
		"mail-type":"BEGIN,END",
		"mail-user":"first.last@mail.com"
	},

	"cell_allPeaks":
	{
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.err"
	},

	"cell_nrPeaks_median_size_peak":
	{
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.err"
	},

	"cell_nrPeaks_merge":
	{
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.err"
	},

	"cell_nrPeaks_cleaning":
	{
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.err"
	},

	"cell_nrPeaks":
	{
		"stdout" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.out",
		"stderr" : "/absolute/path/to/remap-pipeline/4.preprocessing/log/{rule}_{wildcards.cell}_qsub.err"
	}

}