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Bioconda issues with python=3.9 #13

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SusiJo opened this issue May 10, 2023 · 0 comments
Open

Bioconda issues with python=3.9 #13

SusiJo opened this issue May 10, 2023 · 0 comments
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SusiJo commented May 10, 2023 •
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Description of the bug

Installing the querynator=0.3.3 in a conda environment from the bioconda channel with python=3.9 will result in ModuleNotFoundError: No module named 'civicpy' error. The site-packages of civicpy are not correctly installed when using bioconda.
However, if it is installed via pip or from bioconda with python=3.10 it will work. Also the biocontainer quay.io/biocontainers/querynator:0.3.3--pyh7cba7a3_0 is working fine.

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System information

The issues were reproducible on CentOS and macOS.
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@SusiJo