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01_run_phenix_refine
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01_run_phenix_refine
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phenix.refine ../00/1dla.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp xray_data.r_free_flags.generate=True >& 1dla.log &
phenix.refine ../00/1il5.{pdb,mtz,cif} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 1il5.log &
phenix.refine ../00/1ok9.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 1ok9.log &
phenix.refine ../00/1va7.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 1va7.log &
phenix.refine ../00/1y1l.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 1y1l.log &
phenix.refine ../00/2ghj.{pdb,mtz} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp xray_data.r_free_flags.generate=True >& 2ghj.log &
phenix.refine ../00/2jee.{pdb,mtz} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp xray_data.r_free_flags.generate=True >& 2jee.log &
phenix.refine ../00/2oeq.{pdb,mtz} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 2oeq.log &
phenix.refine ../00/2oy0.{pdb,mtz} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 2oy0.log &
phenix.refine ../00/2pro.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 2pro.log &
phenix.refine ../00/2x10.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 2x10.log &
phenix.refine ../00/3dtj.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp xray_data.r_free_flags.generate=True >& 3dtj.log &
phenix.refine ../00/3kyi.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3kyi.log &
phenix.refine ../00/3nak.{pdb,mtz,cif} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3nak.log &
phenix.refine ../00/3oe9.{pdb,mtz,cif} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3oe9.log &
phenix.refine ../00/3tz9.{pdb,mtz,cif} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3tz9.log &
phenix.refine ../00/3uds.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3uds.log &
phenix.refine ../00/3uj4.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 3uj4.log &
phenix.refine ../00/4ctd.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4ctd.log &
phenix.refine ../00/4drw.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4drw.log &
phenix.refine ../00/4fsx.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp xray_data.labels="IOBS" >& 4fsx.log &
phenix.refine ../00/4k2r.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4k2r.log &
phenix.refine ../00/4p7h.{pdb,mtz,cif} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4p7h.log &
phenix.refine ../00/4rnf.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4rnf.log &
phenix.refine ../00/4xa1.{pdb,mtz} nqh=False ordered_solvent=true ordered_solvent.low_r=5 optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 4xa1.log &
phenix.refine ../00/5d12.{pdb,mtz,cif} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 5d12.log &
phenix.refine ../00/5diz.{pdb,mtz} nqh=False optimize_xyz=true optimize_adp=true nproc=8 --overwrite strategy=individual_sites+individual_adp >& 5diz.log &