CERES installation issue

[rishikeshprl]

Dear Sir/Madam,
I am working at Physical Research Laboratory. I am trying to install CERES on my machine but having the following trouble (below). Could you please help me how I can solve this issue.

Many thanks in advance.

1.- Preparing to install. Checking if your system has the libraries
needed to compile the codes...

 ----------------------------------------------------------
 > Numpy is ok!
 > Scipy is ok!
 > Pyfits is ok!
 ---------------------------------------------------------- 

 Done! All libraries checked. 

2.- Building processes...

 ----------------------------------------------------------
 > Fortran code found in directory utils/CCF. Building...
 ----------------------------------------------------------
 > ERROR: CERES couldn't be installed.
 > Problem building code in utils/CCF. The error was:

error: Command "/usr/local/bin/gfortran -ffixed-line-length-none -fPIC -O3 -funroll-loops -I/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpn9svxfw7/src.macosx-10.11-x86_64-3.5 -I/usr/local/lib/python3.5/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python3/3.5.2_1/Frameworks/Python.framework/Versions/3.5/include/python3.5m -c -c CCF.f -o /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpn9svxfw7/CCF.o" failed with exit status 4

 > If you can't solve the problem, please communicate
 > with the CERES team for help.

[jmccormac01]

CERES is written for Python 2.6 and 2.7. I've not tried using it with 3.X but from what I've seen it wouldn't work. Trying using it with v2.7?

[rishikeshprl]

sir,
i tried it with python2.7. but again it is giving that same error as follows:
2.- Building processes...

 ----------------------------------------------------------
 > Fortran code found in directory utils/CCF. Building...
 ----------------------------------------------------------
 > ERROR: CERES couldn't be installed.
 > Problem building code in utils/CCF. The error was:

error: Command "/usr/local/bin/gfortran -ffixed-line-length-none -fPIC -O3 -funroll-loops -I/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmp85u1pe/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.12/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c -c CCF.f -o /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmp85u1pe/CCF.o" failed with exit status 4

 > If you can't solve the problem, please communicate
 > with the CERES team for help.

[rabrahm]

Hi, In order to have a clearer picture about the problem, can you try to go to the ceres/utils/CCF directory and run directly the command that is in the 'Proceso_f2py' file? That output should be more informative. Thanks!

[rishikeshprl]

hello sir,
i ran 'Proceso_f2py' file directly but it also gave some errors as follows.

thanks!

this is the terminal output error:

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "CCF" sources
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7
f2py options: []
f2py: CCF.pyf
Reading fortran codes...
Reading file 'CCF.pyf' (format:free)
Post-processing...
Block: CCF
Block: ccf
Block: ccfpix
Block: ccfcos
Post-processing (stage 2)...
Building modules...
Building module "CCF"...
Creating wrapper for Fortran function "ccf"("ccf")...
Constructing wrapper function "ccf"...
ccf,snw = ccf(m_l,m_h,wav,spec,weight,sn,v_r,[n,m])
Creating wrapper for Fortran function "ccfpix"("ccfpix")...
Constructing wrapper function "ccfpix"...
ccfpix = ccfpix(m_l,m_h,x,thar,delta,[n,m])
Creating wrapper for Fortran function "ccfcos"("ccfcos")...
Constructing wrapper function "ccfcos"...
ccfcos,snw = ccfcos(m_l,m_h,wav,spec,weight,sn,v_r,[n,m])
Wrote C/API module "CCF" to file "/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCFmodule.c"
Fortran 77 wrappers are saved to "/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCF-f2pywrappers.f"
adding '/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/fortranobject.c' to sources.
adding '/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7' to include_dirs.
copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7
copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7
adding '/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCF-f2pywrappers.f' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
Found executable /usr/local/bin/gfortran
customize Gnu95FCompiler using build_ext
building 'CCF' extension
compiling C sources
C compiler: clang -fno-strict-aliasing -fno-common -dynamic -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders/lg
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP
creating /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7
compile options: '-I/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.12/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
clang: /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCFmodule.c
In file included from /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCFmodule.c:19:
In file included from /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/fortranobject.h:13:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by "
^
/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/CCFmodule.c:147:12: warning: unused function 'f2py_size' [-Wunused-function]
static int f2py_size(PyArrayObject* var, ...)
^
2 warnings generated.
clang: /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/fortranobject.c
In file included from /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/fortranobject.c:2:
In file included from /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7/fortranobject.h:13:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by "
^
1 warning generated.
compiling Fortran sources
Fortran f77 compiler: /usr/local/bin/gfortran -ffixed-line-length-none -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops
compile options: '-I/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.12/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
gfortran:f77: CCF.f
gfortran: internal compiler error: Killed: 9 (program f951)
Please submit a full bug report,
with preprocessed source if appropriate.
See https://github.com/Homebrew/homebrew/issues for instructions.
gfortran: internal compiler error: Killed: 9 (program f951)
Please submit a full bug report,
with preprocessed source if appropriate.
See https://github.com/Homebrew/homebrew/issues for instructions.
error: Command "/usr/local/bin/gfortran -ffixed-line-length-none -fPIC -O3 -funroll-loops -I/var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/src.macosx-10.11-x86_64-2.7 -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/opt/openssl/include -I/usr/local/opt/sqlite/include -I/usr/local/Cellar/python/2.7.12/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c -c CCF.f -o /var/folders/lg/yyvpnn3104l_h61wy23cz1nm0000gr/T/tmpf8dVyP/CCF.o" failed with exit status 4

[rabrahm]

Hi,

So the error is: gfortran: internal compiler error: Killed: 9 (program f951)
Some googling says that this issue is probably not related to CERES. Here I found an issue of another package that can help you maybe: mame/quine-relay#2

Cheers,

[rishikeshprl]

hello sir,
I read that discussion which u have forwarded me. but the issue is not fixed yet.
i get to know from the discussion that the bug is caused by out of memory. i m using mac OS X EI capitan with GNU Fortran (Homebrew gcc 6.2.0) 6.2.0 and that system is having 12 gb memory.

i m not understanding that how it can be out of memory.?

Thanks!!

[rishikeshprl]

Hello Sir,
please tell me which FORTRAN compiler (with its version) is suitable for CERES installation.
Actually i am having GNU Fortran (Homebrew gcc 6.2.0) 6.2.0 . Is it suitable or not??

Many thanks in advance!!!

[rabrahm]

Hi, what I have in my system is :
$ gfortran --version
GNU Fortran (GCC) 4.9.0
Copyright (C) 2014 Free Software Foundation, Inc.

For gcc I have:
$ gcc --version
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1
Apple LLVM version 6.0 (clang-600.0.56) (based on LLVM 3.5svn)
Target: x86_64-apple-darwin13.4.0
Thread model: posix

[ryanblackman]

Hi,

I am having a similar problem during installation. I've tried to match my gfortran and gcc versions to what you have, but I still get the following error:

error: Command "/usr/local/bin/gfortran -ffixed-line-length-none -m64 -fPIC -O3 -funroll-loops -I/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmp6MVsKO/src.macosx-10.6-x86_64-2.7 -I//anaconda/lib/python2.7/site-packages/numpy/core/include -I//anaconda/include/python2.7 -c -c CCF.f -o /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmp6MVsKO/CCF.o" failed with exit status 1

This is the output when running Proceso_f2py:

$ source Proceso_f2py
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "CCF" sources
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7
f2py options: []
f2py: CCF.pyf
Reading fortran codes...
	Reading file 'CCF.pyf' (format:free)
Post-processing...
	Block: CCF
			Block: ccf
			Block: ccfpix
			Block: ccfcos
Post-processing (stage 2)...
Building modules...
	Building module "CCF"...
		Creating wrapper for Fortran function "ccf"("ccf")...
		Constructing wrapper function "ccf"...
		  ccf,snw = ccf(m_l,m_h,wav,spec,weight,sn,v_r,[n,m])
		Creating wrapper for Fortran function "ccfpix"("ccfpix")...
		Constructing wrapper function "ccfpix"...
		  ccfpix = ccfpix(m_l,m_h,x,thar,delta,[n,m])
		Creating wrapper for Fortran function "ccfcos"("ccfcos")...
		Constructing wrapper function "ccfcos"...
		  ccfcos,snw = ccfcos(m_l,m_h,wav,spec,weight,sn,v_r,[n,m])
	Wrote C/API module "CCF" to file "/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCFmodule.c"
	Fortran 77 wrappers are saved to "/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCF-f2pywrappers.f"
  adding '/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/fortranobject.c' to sources.
  adding '/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7' to include_dirs.
copying //anaconda/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7
copying //anaconda/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7
  adding '/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCF-f2pywrappers.f' to sources.
build_src: building npy-pkg config files
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize Gnu95FCompiler
Found executable /usr/local/bin/gfortran
customize Gnu95FCompiler using build_ext
building 'CCF' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -I//anaconda/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders/mv
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD
creating /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7
compile options: '-I/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7 -I//anaconda/lib/python2.7/site-packages/numpy/core/include -I//anaconda/include/python2.7 -c'
gcc: /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/fortranobject.c
In file included from /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/fortranobject.c:2:
In file included from /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/fortranobject.h:13:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:
//anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
1 warning generated.
gcc: /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCFmodule.c
In file included from /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCFmodule.c:19:
In file included from /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/fortranobject.h:13:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from //anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1788:
//anaconda/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by " \
 ^
/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7/CCFmodule.c:147:12: warning: unused function 'f2py_size' [-Wunused-function]
static int f2py_size(PyArrayObject* var, ...)
           ^
2 warnings generated.
compiling Fortran sources
Fortran f77 compiler: /usr/local/bin/gfortran -ffixed-line-length-none -m64 -fPIC -O3 -funroll-loops
Fortran f90 compiler: /usr/local/bin/gfortran -Wall -g -fno-second-underscore -m64 -fPIC -O3 -funroll-loops
Fortran fix compiler: /usr/local/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -m64 -fPIC -O3 -funroll-loops
compile options: '-I/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7 -I//anaconda/lib/python2.7/site-packages/numpy/core/include -I//anaconda/include/python2.7 -c'
gfortran:f77: CCF.f
FATAL:/opt/local/bin/../libexec/as/x86_64/as: I don't understand 'm' flag!
FATAL:/opt/local/bin/../libexec/as/x86_64/as: I don't understand 'm' flag!
error: Command "/usr/local/bin/gfortran -ffixed-line-length-none -m64 -fPIC -O3 -funroll-loops -I/var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/src.macosx-10.6-x86_64-2.7 -I//anaconda/lib/python2.7/site-packages/numpy/core/include -I//anaconda/include/python2.7 -c -c CCF.f -o /var/folders/mv/g_2q95mj5m73b5fwg4x4x_h00000gn/T/tmpacnsKD/CCF.o" failed with exit status 1

These are the compiler versions I am using:

$ gfortran --version
gcc-4.9 (Homebrew GCC 4.9.4) 4.9.4
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

$ gcc --version
Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.12.sdk/usr/include/c++/4.2.1
Apple LLVM version 8.1.0 (clang-802.0.42)
Target: x86_64-apple-darwin16.0.0
Thread model: posix

I am also using Python 2.7.12. Any help would be much appreciated.

[nespinoza]

Hi @ryanblackman; sorry for coming so late on this answer. Your problem is 'FATAL:/opt/local/bin/../libexec/as/x86_64/as: I don't understand 'm' flag!', and this has to do with the compiler apparently not getting the correct routes. To solve this, in my case I had to do export PATH=/usr/bin:$PATH.
Cheers

N.