broad-references.yaml

Name: Broad Genome References
Description: Broad maintained human genome reference builds hg19/hg38 and decoy references.
Documentation: https://s3.amazonaws.com/broad-references/broad-references-readme.html
Contact: hensonc@broadinstitute.org
ManagedBy: Broad Institute
UpdateFrequency: Monthly
Tags:
  - aws-pds
  - biology
  - bioinformatics
  - cancer
  - genetic
  - genomic
  - life sciences
  - reference index
  - Homo sapiens
License:  CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
Resources:
  - Description: "This dataset includes two human genome references assembled by the Genome Reference Consortium: Hg19 and Hg38."
    ARN: arn:aws:s3:::broad-references
    Region: us-east-1
    Type: S3 Bucket
DataAtWork:
  Tutorials:
    - Title: Using Amazon FSx for Lustre for Genomics Workflows on AWS
      URL: https://aws.amazon.com/blogs/storage/using-amazon-fsx-for-lustre-for-genomics-workflows-on-aws/
      AuthorName: W. Lee Pang
      AuthorURL: https://www.linkedin.com/in/lee-pang-a039a26/
      Services:
      - Batch
      - FSx
  Tools & Applications:
    - Title: Genomics Workflows on AWS - Cromwell on AWS
      URL: https://docs.opendata.aws/genomics-workflows/orchestration/cromwell/cromwell-examples/#real-world-example-haplotypecaller
      AuthorName: W. Lee Pang
      AuthorURL: https://www.linkedin.com/in/lee-pang-a039a26/
  Publications:
    - Title: Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA
      URL: https://www.cell.com/cell-reports-methods/pdf/S2667-2375(21)00165-X.pdf
      AuthorName: Willey J. C., Morrison T. B., Austermiller B., Crawford E. E., et al (2021)