pyproject.toml

[build-system]
requires = ["setuptools>=61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "gaston-spatial"
version = "0.0.1"
authors = [
  { name="Uthsav Chitra", email="uchitra@princeton.edu" },
  { name="Brian Arnold", email="brianjohnarnold@gmail.com" },
  { name="Hirak Sarkar", email="hirak@princeton.edu" },
  { name="Cong Ma", email="congma@princeton.edu" },
  { name="Ben Raphael", email="braphael@cs.princeton.edu" },
]
description = "GASTON: interpretable deep learning model for spatial transcriptomics"
readme = "README.md"
requires-python = ">=3.8"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: BSD License",
    "Operating System :: OS Independent",
]
dependencies = [
    "torch",
    "matplotlib",
    "pandas",
    "scikit-learn",
    "numpy",
    "jupyterlab",
    "seaborn",
    "tqdm",
    "scipy"
]
license = {text = "BSD"}
keywords = ["spatial transcriptomics", "neural network", "tissue layer"]

[project.optional-dependencies]
docs = [
    "ipython",
    "ipywidgets>=8.0.0",
    "sphinx>=5.3",
    "sphinx-autodoc-annotation",
    "sphinx-autodoc-typehints>=1.10.3",
    "sphinx_rtd_theme",
    "sphinxcontrib-bibtex>=2.3.0",
    "sphinxcontrib-spelling>=7.6.2",
    "nbsphinx>=0.8.1",
    "myst-nb>=0.17.1",
    "sphinx_copybutton>=0.5.0",
]

[project.scripts]
gaston = "gaston.__main__:main"

[project.urls]
"Homepage" = "https://github.com/raphael-group/GASTON"

[tool.setuptools.packages.find]
where = ["src"]
include = ["gaston*"]