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Any update on that?
I am trying to use annotatr by simply loading the newest Ensembl genome annotation of Danio rerio (Danio_rerio.GRCz11.113 ; gtf file) through import(my_gtf_file). I manage to easily create a GRanges object that seems totally fine and matching the annotation. Now I want to annotate my regions (which correspond to some motifs found with HOMER scanMotifGenomeWide.pl). My goal is to get the distribution of my motifs of interest, namely if they appear more inside gene bodies or outside.
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