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Add support for danRer11 #21

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rcavalcante opened this issue Jun 23, 2019 · 1 comment
Open

Add support for danRer11 #21

rcavalcante opened this issue Jun 23, 2019 · 1 comment

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@rcavalcante
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@npont
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npont commented Jan 7, 2025

Hello,

Any update on that?
I am trying to use annotatr by simply loading the newest Ensembl genome annotation of Danio rerio (Danio_rerio.GRCz11.113 ; gtf file) through import(my_gtf_file). I manage to easily create a GRanges object that seems totally fine and matching the annotation. Now I want to annotate my regions (which correspond to some motifs found with HOMER scanMotifGenomeWide.pl). My goal is to get the distribution of my motifs of interest, namely if they appear more inside gene bodies or outside.

Do you think it is indeed doable with annotatr?

Thank you very much!

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