gwas.yaml

name: gwas
channels:
    - conda-forge
dependencies:
    # Pin to versions in 2.30.0 dask docker image:
    # - https://hub.docker.com/layers/daskdev/dask/2.30.0/images/sha256-fb5d6b4eef7954448c244d0aa7b2405a507f9dad62ae29d9f869e284f0193c53?context=explore
    # - https://github.com/dask/dask-docker/blob/99fa808d4dac47b274b5063a23b5f3bbf0d3f105/base/Dockerfile
    # - Versions exported from docker using `conda env export --from-history`
    - python==3.8.0
    - numpy==1.18.1
    - distributed==2020.12.0
    - tornado==6.1
    - dask==2020.12.0
    - xarray==0.16.2
    - tini==0.18.0
    - lz4==3.1.1
    - cytoolz==0.11.0
    - nomkl==1.0
    - zarr==2.6.1
    - pandas==1.0.1
    - python-blosc==1.9.2
    - dask-ml==1.7.0
    - gcsfs==0.7.1
    - msgpack-python=1.0.0
    - fire==0.3.1
    - numba==0.52.0
    - pyarrow==2.0.0
    - retrying==1.3.3
    - pip
    - pip:
        - cbgen==0.1.6
        - rechunker==0.3.1
        - bed-reader==0.1.1
        # - git+https://github.com/pystatgen/sgkit.git@c5548821653fa2759421668092716d2036834ffe#egg=sgkit
        # Update to use tensordot in gwas
        - git+https://github.com/eric-czech/sgkit.git@9323b11ee9e982186f37f001f8047cadc02173c0#egg=sgkit