setup.cfg

[flake8]
ignore =
    # whitespace before ':' - doesn't work well with black
    E203
    E402
    # line too long - let black worry about that
    E501
    # do not assign a lambda expression, use a def
    E731
    # line break before binary operator
    W503

[isort]
profile = black
default_section = THIRDPARTY
known_first_party = ukb_gwas_pipeline_nealelab
known_third_party = dask,dask_cloudprovider,fire,fsspec,gcsfs,numpy,pandas,pyspark,retrying,sgkit,xarray,yaml,zarr
multi_line_output = 3
include_trailing_comma = True
force_grid_wrap = 0
use_parentheses = True
line_length = 88

[mypy-dask.*]
ignore_missing_imports = True
[mypy-numpy.*]
ignore_missing_imports = True
[mypy-pandas.*]
ignore_missing_imports = True
[mypy-pytest.*]
ignore_missing_imports = True
[mypy-zarr.*]
ignore_missing_imports = True
[mypy-gcsfs.*]
ignore_missing_imports = True