From 3fc02995d4e96b7b7d29ba280a59b9618f6a2b0e Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Mon, 2 Sep 2024 21:29:22 +0200 Subject: [PATCH 1/8] Add drone lidar example --- examples/python/drone_lidar/.gitignore | 1 + examples/python/drone_lidar/README.md | 27 ++++ examples/python/drone_lidar/drone_lidar.py | 171 +++++++++++++++++++++ examples/python/drone_lidar/pyproject.toml | 19 +++ pixi.lock | 27 ++++ pixi.toml | 1 + 6 files changed, 246 insertions(+) create mode 100644 examples/python/drone_lidar/.gitignore create mode 100644 examples/python/drone_lidar/README.md create mode 100644 examples/python/drone_lidar/drone_lidar.py create mode 100644 examples/python/drone_lidar/pyproject.toml diff --git a/examples/python/drone_lidar/.gitignore b/examples/python/drone_lidar/.gitignore new file mode 100644 index 000000000000..3af0ccb687b4 --- /dev/null +++ b/examples/python/drone_lidar/.gitignore @@ -0,0 +1 @@ +/data diff --git a/examples/python/drone_lidar/README.md b/examples/python/drone_lidar/README.md new file mode 100644 index 000000000000..ae2912bac65d --- /dev/null +++ b/examples/python/drone_lidar/README.md @@ -0,0 +1,27 @@ + + + +Display drone LiDAR data kindly provided by [Flyability](https://www.flyability.com). + + +## Running + +Install the example pacakge +```bash +pip install -e examples/python/drone_lidar +``` + +To experiment with the provided example, simply execute the main Python script: +```bash +python -m drone_lidar +``` + +If you wish to customize it, explore additional features, or save it, use the CLI with the `--help` option for guidance: + +```bash +python -m drone_lidar --help +``` diff --git a/examples/python/drone_lidar/drone_lidar.py b/examples/python/drone_lidar/drone_lidar.py new file mode 100644 index 000000000000..b4e44b5a9945 --- /dev/null +++ b/examples/python/drone_lidar/drone_lidar.py @@ -0,0 +1,171 @@ +from __future__ import annotations + +import io +import typing +import zipfile +from argparse import ArgumentParser +from pathlib import Path + +import laspy +import numpy as np +import numpy.typing as npt +import requests +import rerun as rr +from tqdm import tqdm + +DATA_DIR = Path(__file__).parent / "dataset" +MAP_DATA_DIR = DATA_DIR / "map_data" +if not DATA_DIR.exists(): + DATA_DIR.mkdir() + +LIDAR_DATA_FILE = DATA_DIR / "livemap.las" +TRAJECTORY_DATA_FILE = DATA_DIR / "livetraj.csv" + +LIDAR_DATA_URL = "https://storage.googleapis.com/rerun-example-datasets/flyability/basement/livemap.las.zip" +TRAJECTORY_DATA_URL = "https://storage.googleapis.com/rerun-example-datasets/flyability/basement/livetraj.csv" + + +def download_with_progress(url: str, what: str) -> io.BytesIO: + """Download a file with a tqdm progress bar.""" + chunk_size = 1024 * 1024 + resp = requests.get(url, stream=True) + total_size = int(resp.headers.get("content-length", 0)) + with tqdm( + desc=f"Downloading {what}", + total=total_size, + unit="iB", + unit_scale=True, + unit_divisor=1024, + ) as progress: + download_file = io.BytesIO() + for data in resp.iter_content(chunk_size): + download_file.write(data) + progress.update(len(data)) + + download_file.seek(0) + return download_file + + +def unzip_file_from_archive_with_progress(zip_data: typing.BinaryIO, file_name: str, dest_dir: Path) -> None: + """Unzip the file named `file_name` from the zip archive contained in `zip_data` to `dest_dir`.""" + with zipfile.ZipFile(zip_data, "r") as zip_ref: + file_info = zip_ref.getinfo(file_name) + total_size = file_info.file_size + + with tqdm( + total=total_size, desc=f"Extracting file {file_name}", unit="iB", unit_scale=True, unit_divisor=1024 + ) as progress: + with zip_ref.open(file_name) as source, open(dest_dir / file_name, "wb") as target: + for chunk in iter(lambda: source.read(1024 * 1024), b""): + target.write(chunk) + progress.update(len(chunk)) + + +def download_dataset() -> None: + if not LIDAR_DATA_FILE.exists(): + unzip_file_from_archive_with_progress( + download_with_progress(LIDAR_DATA_URL, LIDAR_DATA_FILE.name), LIDAR_DATA_FILE.name, LIDAR_DATA_FILE.parent + ) + + if not TRAJECTORY_DATA_FILE.exists(): + TRAJECTORY_DATA_FILE.write_bytes( + download_with_progress(TRAJECTORY_DATA_URL, TRAJECTORY_DATA_FILE.name).getvalue() + ) + + +# TODO(#7333): this utility should be included in the Rerun SDK +def compute_partitions( + times: npt.NDArray[np.float64], +) -> tuple[typing.Sequence[float], typing.Sequence[np.uintp]]: + """ + Compute partitions given possibly repeating times. + + This function returns two arrays: + - Non-repeating times: a filtered version of `times` where repeated times are removed. + - Partitions: an array of integers where each element indicates the number of elements for the corresponding time + values in the original `times` array. + + By construction, both arrays should have the same length, and the sum of all elements in `partitions` should be + equal to the length of `times`. + """ + + change_indices = (np.argwhere(times != np.concatenate([times[1:], np.array([np.nan])])).T + 1).reshape(-1) + partitions = np.concatenate([[change_indices[0]], np.diff(change_indices)]) + non_repeating_times = times[change_indices - 1] + + assert np.sum(partitions) == len(times) + assert len(non_repeating_times) == len(partitions) + + return non_repeating_times, partitions # type: ignore[return-value] + + +def log_lidar_data() -> None: + las_data = laspy.read(LIDAR_DATA_FILE) + + # get positions and convert to meters + points = las_data.points + positions = np.column_stack((points.X / 1000.0, points.Y / 1000.0, points.Z / 1000.0)) + times = las_data.gps_time + + non_repeating_times, partitions = compute_partitions(times) + + # log all positions at once using the computed partitions + rr.send_columns( + "/lidar", + [rr.TimeSecondsColumn("time", non_repeating_times)], + [rr.components.Position3DBatch(positions).partition(partitions)], + ) + + rr.log_components( + "/lidar", + [ + # TODO(#6889): indicator component no longer needed not needed when we have tagged components + rr.Points3D.indicator(), + rr.components.Radius(-0.2), # negative radii are interpreted in UI units (instead of scene units) + rr.components.Color((0, 0, 128)), + ], + static=True, + ) + + +def log_drone_trajectory() -> None: + data = np.genfromtxt(TRAJECTORY_DATA_FILE, delimiter=" ", skip_header=1) + timestamp = data[:, 0] + positions = data[:, 1:4] + + rr.send_columns( + "/drone", + [rr.TimeSecondsColumn("time", timestamp)], + [rr.components.Position3DBatch(positions)], + ) + + rr.log_components( + "/drone", + [ + # TODO(#6889): indicator component no longer needed not needed when we have tagged components + rr.Points3D.indicator(), + rr.components.Radius(0.5), + rr.components.Color([255, 0, 0]), + ], + static=True, + ) + + +def main() -> None: + parser = ArgumentParser(description="Visualize drone-based LiDAR data") + rr.script_add_args(parser) + args = parser.parse_args() + + download_dataset() + + # blueprint = rrb.Horizontal(rrb.Spatial3DView(origin="/"), rrb.TimeSeriesView(origin="/aircraft")) + # rr.script_setup(args, "rerun_example_air_traffic_data", default_blueprint=blueprint) + + rr.script_setup(args, "rerun_example_drone_lidar") + + log_lidar_data() + log_drone_trajectory() + + +if __name__ == "__main__": + main() diff --git a/examples/python/drone_lidar/pyproject.toml b/examples/python/drone_lidar/pyproject.toml new file mode 100644 index 000000000000..b4958c6b4a2e --- /dev/null +++ b/examples/python/drone_lidar/pyproject.toml @@ -0,0 +1,19 @@ +[project] +name = "drone_lidar" +version = "0.1.0" +readme = "README.md" +dependencies = [ + "laspy", + "numpy", + "requests", + "rerun-sdk", + "tqdm", +] + +[project.scripts] +drone_lidar = "drone_lidar:main" + + +[build-system] +requires = ["hatchling"] +build-backend = "hatchling.build" diff --git a/pixi.lock b/pixi.lock index c676c993324d..b998b1a91f60 100644 --- a/pixi.lock +++ b/pixi.lock @@ -2514,6 +2514,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -2924,6 +2925,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/incremental_logging - pypi: examples/python/lidar - pypi: examples/python/live_camera_edge_detection @@ -3308,6 +3310,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -3696,6 +3699,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -4076,6 +4080,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -4496,6 +4501,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -4857,6 +4863,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/incremental_logging - pypi: examples/python/lidar - pypi: examples/python/live_camera_edge_detection @@ -5196,6 +5203,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -5539,6 +5547,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -5871,6 +5880,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -7994,6 +8004,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -8499,6 +8510,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/incremental_logging - pypi: examples/python/lidar - pypi: examples/python/live_camera_edge_detection @@ -8975,6 +8987,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -9455,6 +9468,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -9908,6 +9922,7 @@ environments: - pypi: examples/python/detect_and_track_objects - pypi: examples/python/dicom_mri - pypi: examples/python/dna + - pypi: examples/python/drone_lidar - pypi: examples/python/face_tracking - pypi: examples/python/gesture_detection - pypi: examples/python/human_pose_tracking @@ -17975,6 +17990,18 @@ packages: purls: [] size: 5344962 timestamp: 1687332955991 +- kind: pypi + name: drone-lidar + version: 0.1.0 + path: examples/python/drone_lidar + sha256: 602dd2bb4646b0e1bee057e01248a8f5da1f177df270dac7ac52be3ba062d299 + requires_dist: + - laspy + - numpy + - requests + - rerun-sdk + - tqdm + editable: true - kind: conda name: exceptiongroup version: 1.2.2 diff --git a/pixi.toml b/pixi.toml index 0172c085f5db..baba31a1f040 100644 --- a/pixi.toml +++ b/pixi.toml @@ -558,6 +558,7 @@ controlnet = { path = "examples/python/controlnet", editable = true } detect_and_track_objects = { path = "examples/python/detect_and_track_objects", editable = true } dicom_mri = { path = "examples/python/dicom_mri", editable = true } dna = { path = "examples/python/dna", editable = true } +drone_lidar = { path = "examples/python/drone_lidar", editable = true } incremental_logging = { path = "examples/python/incremental_logging", editable = true } lidar = { path = "examples/python/lidar", editable = true } live_camera_edge_detection = { path = "examples/python/live_camera_edge_detection", editable = true } From 800b90a9d31cba5bc91718796c88412165aaf620 Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Mon, 2 Sep 2024 21:33:53 +0200 Subject: [PATCH 2/8] Lints --- examples/python/drone_lidar/README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/examples/python/drone_lidar/README.md b/examples/python/drone_lidar/README.md index ae2912bac65d..b08a9fbd90fe 100644 --- a/examples/python/drone_lidar/README.md +++ b/examples/python/drone_lidar/README.md @@ -1,6 +1,6 @@ @@ -10,7 +10,7 @@ Display drone LiDAR data kindly provided by [Flyability](https://www.flyability. ## Running -Install the example pacakge +Install the example package: ```bash pip install -e examples/python/drone_lidar ``` From 9e346bdebacd0f8259550ec8297664529f3104bf Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Mon, 2 Sep 2024 21:35:31 +0200 Subject: [PATCH 3/8] More lints --- examples/python/drone_lidar/pyproject.toml | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/examples/python/drone_lidar/pyproject.toml b/examples/python/drone_lidar/pyproject.toml index b4958c6b4a2e..b4dfa01b61c3 100644 --- a/examples/python/drone_lidar/pyproject.toml +++ b/examples/python/drone_lidar/pyproject.toml @@ -2,13 +2,7 @@ name = "drone_lidar" version = "0.1.0" readme = "README.md" -dependencies = [ - "laspy", - "numpy", - "requests", - "rerun-sdk", - "tqdm", -] +dependencies = ["laspy", "numpy", "requests", "rerun-sdk", "tqdm"] [project.scripts] drone_lidar = "drone_lidar:main" From 7df6ffdaaed4ed20a1726f188392dd3355970e02 Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Tue, 3 Sep 2024 09:12:53 +0200 Subject: [PATCH 4/8] Updated pixi.lock --- pixi.lock | 60253 ++++++++++++++++++++++++---------------------------- 1 file changed, 27798 insertions(+), 32455 deletions(-) diff --git a/pixi.lock b/pixi.lock index b998b1a91f60..bc8fe89fe74e 100644 --- a/pixi.lock +++ b/pixi.lock @@ -12,32 +12,32 @@ environments: - conda: https://conda.anaconda.org/conda-forge/noarch/_sysroot_linux-64_curr_repodata_hack-3-h69a702a_16.conda - conda: https://conda.anaconda.org/conda-forge/linux-64/aiohttp-3.9.5-py311h459d7ec_0.conda - conda: https://conda.anaconda.org/conda-forge/noarch/aiosignal-1.3.1-pyhd8ed1ab_0.tar.bz2 - - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda - 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- pytest-mypy ; extra == 'test' - - pytest-enabler>=2.2 ; extra == 'test' - - pytest-ruff>=0.2.1 ; extra == 'test' - jaraco-itertools ; extra == 'test' - jaraco-functools ; extra == 'test' - more-itertools ; extra == 'test' @@ -43669,6 +39011,7 @@ packages: - pytest-ignore-flaky ; extra == 'test' - jaraco-test ; extra == 'test' - importlib-resources ; python_version < '3.9' and extra == 'test' + - pytest-mypy ; extra == 'type' requires_python: '>=3.8' - kind: conda name: zlib From 035532d17dfca0ee74956f5dafb1f84bf7705b65 Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Tue, 3 Sep 2024 14:40:28 +0200 Subject: [PATCH 5/8] Comments, add blueprint, readme --- examples/python/drone_lidar/.gitignore | 2 +- examples/python/drone_lidar/README.md | 15 ++++++++++- examples/python/drone_lidar/drone_lidar.py | 30 ++++++++++++++-------- 3 files changed, 34 insertions(+), 13 deletions(-) diff --git a/examples/python/drone_lidar/.gitignore b/examples/python/drone_lidar/.gitignore index 3af0ccb687b4..d55dcb8e01de 100644 --- a/examples/python/drone_lidar/.gitignore +++ b/examples/python/drone_lidar/.gitignore @@ -1 +1 @@ -/data +/dataset diff --git a/examples/python/drone_lidar/README.md b/examples/python/drone_lidar/README.md index b08a9fbd90fe..fe65c9b92d3f 100644 --- a/examples/python/drone_lidar/README.md +++ b/examples/python/drone_lidar/README.md @@ -4,8 +4,21 @@ tags = ["3D", "drone", "Lidar"] description = "Display drone-based LiDAR data" --> + + + + + + + -Display drone LiDAR data kindly provided by [Flyability](https://www.flyability.com). + +## Background + +This example displays drone-based indoor LiDAR data loaded from a [`.las`](https://en.wikipedia.org/wiki/LAS_file_format) file. This dataset contains 18.7M points, acquired at 4013 distinct time points (~4650 points per time point). The point data is loaded using the [laspy](https://laspy.readthedocs.io/en/latest/) Python package, and then sent in one go to the viewer thanks to the [`rr.send_columns()`](https://ref.rerun.io/docs/python/0.18.2/common/columnar_api/#rerun.send_columns) API and its `.partition()` helper. Together, these APIs enable associating subgroups of points with each of their corresponding, non-repeating timestamps. + + +[Flyability](https://www.flyability.com) kindly provided the data for this example. ## Running diff --git a/examples/python/drone_lidar/drone_lidar.py b/examples/python/drone_lidar/drone_lidar.py index b4e44b5a9945..d8396bd946d7 100644 --- a/examples/python/drone_lidar/drone_lidar.py +++ b/examples/python/drone_lidar/drone_lidar.py @@ -11,15 +11,15 @@ import numpy.typing as npt import requests import rerun as rr +import rerun.blueprint as rrb from tqdm import tqdm -DATA_DIR = Path(__file__).parent / "dataset" -MAP_DATA_DIR = DATA_DIR / "map_data" -if not DATA_DIR.exists(): - DATA_DIR.mkdir() +DATASET_DIR = Path(__file__).parent / "dataset" +if not DATASET_DIR.exists(): + DATASET_DIR.mkdir() -LIDAR_DATA_FILE = DATA_DIR / "livemap.las" -TRAJECTORY_DATA_FILE = DATA_DIR / "livetraj.csv" +LIDAR_DATA_FILE = DATASET_DIR / "livemap.las" +TRAJECTORY_DATA_FILE = DATASET_DIR / "livetraj.csv" LIDAR_DATA_URL = "https://storage.googleapis.com/rerun-example-datasets/flyability/basement/livemap.las.zip" TRAJECTORY_DATA_URL = "https://storage.googleapis.com/rerun-example-datasets/flyability/basement/livetraj.csv" @@ -121,8 +121,8 @@ def log_lidar_data() -> None: [ # TODO(#6889): indicator component no longer needed not needed when we have tagged components rr.Points3D.indicator(), - rr.components.Radius(-0.2), # negative radii are interpreted in UI units (instead of scene units) - rr.components.Color((0, 0, 128)), + rr.components.Radius(-0.1), # negative radii are interpreted in UI units (instead of scene units) + rr.components.Color((128, 128, 255)), ], static=True, ) @@ -158,10 +158,18 @@ def main() -> None: download_dataset() - # blueprint = rrb.Horizontal(rrb.Spatial3DView(origin="/"), rrb.TimeSeriesView(origin="/aircraft")) - # rr.script_setup(args, "rerun_example_air_traffic_data", default_blueprint=blueprint) + blueprint = rrb.Spatial3DView( + origin="/", + time_ranges=[ + rrb.VisibleTimeRange( + timeline="time", + start=rrb.TimeRangeBoundary.cursor_relative(seconds=-60.0), + end=rrb.TimeRangeBoundary.cursor_relative(), + ) + ], + ) - rr.script_setup(args, "rerun_example_drone_lidar") + rr.script_setup(args, "rerun_example_drone_lidar", default_blueprint=blueprint) log_lidar_data() log_drone_trajectory() From 20697938d5efbf03632d894673e21989deb39bb6 Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Tue, 3 Sep 2024 14:43:21 +0200 Subject: [PATCH 6/8] Update manifest.tomlt --- examples/manifest.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/examples/manifest.toml b/examples/manifest.toml index 759d0a0b7e66..367d9a4fdaf8 100644 --- a/examples/manifest.toml +++ b/examples/manifest.toml @@ -155,6 +155,7 @@ examples = [ "custom_data_loader", "custom_space_view", "custom_store_subscriber", + "drone_lidar", "extend_viewer_ui", "external_data_loader", "incremental_logging", From 9bf3210462c3a9892db9144c5faae9b901c624a6 Mon Sep 17 00:00:00 2001 From: Antoine Beyeler Date: Wed, 4 Sep 2024 11:31:05 +0200 Subject: [PATCH 7/8] pixi 0.25.0 lockfile --- pixi.lock | 2286 +++++++++++++++++++++++++++-------------------------- 1 file changed, 1145 insertions(+), 1141 deletions(-) diff --git a/pixi.lock b/pixi.lock index bc8fe89fe74e..ca8ffb934cc2 100644 --- a/pixi.lock +++ b/pixi.lock @@ -43,9 +43,9 @@ environments: - 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