Can I use merge.txt instead of final.txt?

[phoebe-xin-leung]

Dear Sir or Madam,
I am currently utilizing iCallSV for identifying SVs from WES data. Upon examining the outputs, I observed that the "final.txt" file is derived from the "merged.txt" file by filtering out records where both sites fall within intergenic or intronic regions or are found in genes blacklisted for analysis.
My question is, can I solely rely on the "merged.txt" file for my analysis instead of using the "final.txt" file? In one of my analyses, the "merged.txt" file contained 104 records, whereas the "final.txt" file retained only 35 records after filtering out numerous TRA (Translocation) events.