Reproduce issue r-lib#614 with a copy of the package in a sub-directory

.github/workflows/check-standard.yaml

@@ -42,9 +42,11 @@ jobs:
         with:
           extra-packages: any::rcmdcheck
           needs: check
+          working-directory: test_pkg_subdir
 
       - uses: r-lib/actions/check-r-package@v2-branch
         with:
           check-dir: '"non-default-dir"'
           upload-results: true
           upload-snapshots: true
+          working-directory: test_pkg_subdir

test_pkg_subdir/.Rbuildignore

@@ -0,0 +1,13 @@
+^pr-fetch$
+^pr-push$
+^run-rchk$
+^setup-r$
+^setup-pandoc$
+^setup-tinytex$
+^examples$
+^LICENSE$
+^.github$
+^actions\.Rproj$
+^\.Rproj\.user$
+^Makefile$
+^CITATION.cff$

test_pkg_subdir/.gitignore

@@ -0,0 +1,3 @@
+node_modules/
+.Rproj.user
+.Rhistory

test_pkg_subdir/DESCRIPTION

@@ -0,0 +1,13 @@
+Package: testpackage
+Title: A Simple Test Description File to Test Packages
+Version: 1.0.0
+Authors@R: 
+    c(person(given = "Jim",
+             family = "Hester",
+             role = c("aut", "cre"),
+             email = "james.hester@rstudio.com"))
+Description: This is a simple package used to test the workflow files.
+Imports: xml2, curl
+Suggests: covr, knitr, rmarkdown, testthat
+License: GPL (>= 2)
+VignetteBuilder: knitr, rmarkdown

test_pkg_subdir/LICENSE

@@ -0,0 +1,116 @@
+CC0 1.0 Universal
+
+Statement of Purpose
+
+The laws of most jurisdictions throughout the world automatically confer
+exclusive Copyright and Related Rights (defined below) upon the creator and
+subsequent owner(s) (each and all, an "owner") of an original work of
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+
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test_pkg_subdir/NAMESPACE

@@ -0,0 +1 @@
+useDynLib(testpackage, .registration = TRUE)

test_pkg_subdir/R/foo.R

@@ -0,0 +1,9 @@
+add_one <- function(x) {
+  curl::curl
+  xml2::read_xml
+  x + 1
+}
+
+times2 <- function(x) {
+  .Call(test_fun, as.integer(x)[1]);
+}

test_pkg_subdir/README.md

@@ -0,0 +1,111 @@
+# GitHub Actions for the R language
+
+[![R build status](https://github.com/r-lib/actions/workflows/R-CMD-check/badge.svg)](https://github.com/r-lib/actions/actions?workflow=R-CMD-check)
+[![RStudio community](https://img.shields.io/badge/community-github--actions-blue?style=social&logo=rstudio&logoColor=75AADB)](https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions)
+
+This repository stores [GitHub Actions](https://github.com/features/actions)
+for R projects, which can be used to do a variety of CI tasks. It also has a
+number of [example workflows](https://github.com/r-lib/actions/tree/v2/examples) which use
+these actions.
+
+## Getting started
+
+See [this blog post](https://www.tidyverse.org/blog/2022/06/actions-2-0-0/) on the Tidyverse blog.
+
+## Releases and tags
+
+We use major version tags to mark breaking changes in these actions.
+For the current version, please use the `v2` tag, e.g.:
+
+```yaml
+- uses: r-lib/actions/setup-r@v2
+```
+
+The `v2` tag occasionally changes, to introduce non-breaking fixes and
+improvements. These changes use more fine-grained tags, e.g. `v2.0.1`.
+You can refer to these as well in your workflow files if you need to.
+
+## List of actions
+
+1. [r-lib/actions/setup-r](https://github.com/r-lib/actions/tree/v2/setup-r) - Sets up [R](https://r-project.org)
+1. [r-lib/actions/setup-r-dependencies](https://github.com/r-lib/actions/tree/v2/setup-r-dependencies) - Installs packages declared in `DESCRIPTION`
+1. [r-lib/actions/setup-renv](https://github.com/r-lib/actions/tree/v2/setup-renv) - Installs packages from renv lockfile
+1. [r-lib/actions/setup-pandoc](https://github.com/r-lib/actions/tree/v2/setup-pandoc) - Sets up [pandoc](https://pandoc.org/)
+1. [r-lib/actions/setup-tinytex](https://github.com/r-lib/actions/tree/v2/setup-tinytex) - Sets up LaTeX with [tinytex](https://yihui.name/tinytex)
+1. [r-lib/actions/check-r-package](https://github.com/r-lib/actions/tree/v2/check-r-package) - Runs `R CMD check` on an R package
+1. [r-lib/actions/pr-fetch](https://github.com/r-lib/actions/tree/v2/pr-fetch) - Fetches changes of a PR associated with an event
+1. [r-lib/actions/pr-push](https://github.com/r-lib/actions/tree/v2/pr-push) - Pushes changes to a PR associated with an event
+1. [r-lib/actions/run-rchk](https://github.com/r-lib/actions/tree/v2/run-rchk) - Runs [rchk](https://github.com/kalibera/rchk) tests to detect memory protection errors in C source code
+
+## What's new?
+
+See the [`v2` release notes](https://github.com/r-lib/actions/releases/tag/v2).
+These notes are kept current with the changes in `v2`.
+
+## Examples
+
+See the [r-lib/actions/examples](https://github.com/r-lib/actions/tree/v2/examples) directory
+for a variety of example workflows using these actions.
+
+## Where to find help
+
+If your build fails, and you are unsure of why, here are some useful strategies for getting help.
+
+1. Figure out what caused the error. Look for the _first_ time the word
+   'error' appears in the build log. Quite often errors at the end of the log are caused
+   by an earlier issue, so it is best to look for the root cause.
+1. Take advantage of [GitHub's code search](https://github.com/search?q=path%3A.github%2Fworkflows) to find similar yaml files.
+   Use 'path:.github/workflows' to restrict your search to GitHub Action workflow files and also include additional terms specific to your problem.
+   e.g. If you need to figure out how to install geospatial libraries such as [gdal](https://gdal.org/), use a search like ['gdal path:.github/workflows'](https://github.com/search?q=gdal+path%3A.github%2Fworkflows).
+   If you want to restrict results only to GitHub Actions workflows that use R you can add search for ['"setup-r" path:.github/workflows](https://github.com/search?q=%22setup-r%22+path%3A.github%2Fworkflows)
+1. Open an issue on [![RStudio
+   community](https://img.shields.io/badge/community-github--actions-blue?style=social&logo=rstudio&logoColor=75AADB)](https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions)
+   about your problem. Be sure to link to the workflow file you are using and a
+   failing build to help others help you.
+1. If your issue seems related to GitHub Actions, but is not specific to R, open an
+   issue at the [GitHub Actions
+   Community](https://git.luolix.topmunity/t5/GitHub-Actions/bd-p/actions) page.
+1. If you have done all of the above and are __absolutely__ sure there is a bug
+   in one of the R specific actions listed above, check if there is an open issue
+   about it [in this repo](https://github.com/r-lib/actions/issues). Look at the
+   pinned issues at the top first! We pin issues that affect many people, and the
+   issue discussions often contain workarounds.
+1. Otherwise open a [new issue in this repo](https://github.com/r-lib/actions/issues/new/choose).
+
+> If using a general search engine or GitHub search about your problem/idea, please note that content published prior to the Fall 2019 is probably outdated because the beta version of GitHub Actions was different. More recent posts or answers could be outdated too since GitHub Actions evolve, so refer to [GitHub Actions official docs](https://help.github.com/en/actions) in case of doubt (and to existing working workflows) and [GitHub changelog](https://github.blog/changelog/).
+
+## Common questions
+
+1. *Why are my builds with plots failing on macOS?*\
+\
+  You need to install XQuartz to do plotting with the default quartz device on macOS. This can be done by adding the following to your workflow.
+    ```yaml
+    - if: runner.os == 'macOS'
+      run: brew install --cask xquartz
+    ```
+
+1. *Why are my Windows builds failing with an error about `configure.ac` having CRLF line endings?*\
+\
+  On Windows, when your repo is checked out using git, the line endings are automatically changed to CRLF. R's check process specifically checks if the `configure.ac` file has these line endings, and will error if it does. To avoid this, add a `.gitattributes` file to the top level of your package with the following to configure git to always use LF line endings for this file: \
+  `configure.ac text eol=lf`
+
+1. *How can I customize an action to run R code?*\
+\
+The safest way is to add a `step` to your action, specifying `Rscript {0}` as the `shell` for that step. Here's an example from the [bookdown action](https://github.com/r-lib/actions/tree/v2-branch/examples#build-bookdown-site):
+    ```yaml
+    - name: Build site
+      run: bookdown::render_book("index.Rmd", quiet = TRUE)
+      shell: Rscript {0}
+   ```
+
+## Additional resources
+
+- [GitHub Actions for R](https://www.jimhester.com/talk/2020-rsc-github-actions/), Jim Hester's talk at rstudio::conf 2020. [Recording](https://resources.rstudio.com/rstudio-conf-2020/azure-pipelines-and-github-actions-jim-hester), [slidedeck](https://speakerdeck.com/jimhester/github-actions-for-r).
+- [GitHub Actions advent calendar](https://www.edwardthomson.com/blog/github_actions_advent_calendar.html) a series of blogposts by Edward Thomson, one of the GitHub Actions product managers
+  highlighting features of GitHub Actions.
+- [GitHub Actions with R](https://ropenscilabs.github.io/actions_sandbox/) - a short online book about using GitHub Actions with R, produced as part of the [rOpenSci OzUnconf](https://ozunconf19.ropensci.org/).
+- [Awesome Actions](https://github.com/sdras/awesome-actions#awesome-actions---) - a curated list of custom actions. **Note** that many of these are from early in the GitHub Actions beta and may no longer work.
+
+## License ![CC0 licensed](https://img.shields.io/github/license/r-lib/actions)
+
+All examples in this repository are published with the [CC0](./LICENSE) license.

test_pkg_subdir/src/test.c

@@ -0,0 +1,18 @@
+
+#include <Rinternals.h>
+#include <R_ext/Rdynload.h>
+
+SEXP test_fun(SEXP arg) {
+  return ScalarInteger(INTEGER(arg)[0] * 2);
+}
+
+static const R_CallMethodDef callMethods[]  = {
+  { "test_fun",  (DL_FUNC) test_fun,  1 },
+  { NULL, NULL, 0 }
+};
+
+void R_init_testpackage(DllInfo *dll) {
+  R_registerRoutines(dll, NULL, callMethods, NULL, NULL);
+  R_useDynamicSymbols(dll, FALSE);
+  R_forceSymbols(dll, TRUE);
+}

test_pkg_subdir/tests/test.R

@@ -0,0 +1,6 @@
+# artificial test failure
+stopifnot(FALSE)
+
+stopifnot(testpackage:::add_one(1) == 2)
+
+stopifnot(testpackage:::times2(10) == 20L)

test_pkg_subdir/tests/testthat.R

@@ -0,0 +1,5 @@
+
+library(testthat)
+library(testpackage)
+
+test_check("testpackage")

test_pkg_subdir/tests/testthat/_snaps/test.md

@@ -0,0 +1,39 @@
+# snap
+
+    Code
+      mtcars
+    Output
+                           mpg cyl  disp  hp drat    wt  qsec vs am gear carb
+      Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4
+      Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4
+      Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1
+      Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1
+      Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2
+      Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1
+      Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4
+      Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2
+      Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2
+      Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4
+      Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4
+      Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3
+      Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3
+      Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3
+      Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4
+      Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4
+      Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4
+      Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1
+      Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2
+      Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1
+      Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1
+      Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2
+      AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2
+      Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4
+      Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2
+      Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1
+      Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2
+      Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2
+      Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4
+      Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6
+      Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8
+      Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2
+

test_pkg_subdir/tests/testthat/test.R

@@ -0,0 +1,5 @@
+
+test_that("snap", {
+  local_edition(3)
+  expect_snapshot(mtcars)
+})

test_pkg_subdir/vignettes/test.Rmd

@@ -0,0 +1,22 @@
+---
+title: "Test vignette for GH Actions"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{Test vignette for GH Actopns}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>"
+)
+```
+
+Irure ad excepteur aliqua esse id sint ex aliquip laborum. Officia laborum ex cupidatat exercitation velit. Nisi elit incididunt nisi ullamco. Ut Lorem eiusmod anim ipsum dolore cupidatat officia non. Culpa voluptate consectetur in ullamco minim sit sunt. Ad aute laborum laborum cillum qui consequat proident sit ad incididunt. Enim nisi nulla aliquip anim fugiat deserunt aliqua aliqua sunt nisi commodo magna reprehenderit. Reprehenderit dolor sunt nulla mollit est magna exercitation dolore magna. Mollit qui labore tempor commodo veniam cupidatat esse irure nisi eiusmod qui dolore nisi.
+
+```{r}
+summary(mtcars)
+```
+