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UKButterflies

NERC UK Butterfly project: adaptation across time

1. Script to extract contig/scaffold info:

grep_vcf_info.sh

Output 1 for G triplet: G$i.seqinfo_variants files (i = 1:3)

  • First column: label
  • Second: length
  • Third: nb of snps

Output 2 for G triplet: G$i.seqinfo_novariants files (i = 1:3). This file contain all contigs that presented no variants

  • First column: label
  • Second: length