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conda not activated at nextclade if standard profile is used #56

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MarieLataretu opened this issue Apr 18, 2023 · 1 comment
Open
2 tasks done

conda not activated at nextclade if standard profile is used #56

MarieLataretu opened this issue Apr 18, 2023 · 1 comment
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MarieLataretu commented Apr 18, 2023 •
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no problem with -profile conda,local, but with missing -profile parameter

  • check if reproducible
  • pangolin also affected?
@MarieLataretu MarieLataretu self-assigned this Apr 18, 2023
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Conda/mamba check via profile name -> only check for "conda" and "mamba", not the standard profile -> conda is set to null with the standard profile

It seems like the conda directive doesn't need to be set to null with nextlfow > 22.10.1 (see nf-core modules)

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