build.xml

<?xml version="1.0" encoding="UTF-8"?>

<project default="build-jar" name="Build annotations jar" basedir=".">

	<!-- java -->
	<property name="java.src" location="${basedir}/src" />
	<property name="classes" location="${basedir}/bin" />
	<property name="lib.path" location="${basedir}/lib" />
	<property name="jar.version" value="1.0" />
	<property name="jar.name" value="compbio-conservation-${jar.version}.jar" />
	<property name="jar.path" value="${basedir}/${jar.name}" />
	<property name="distdir" value="website"/>
	<property name="aacon-source-jar" value="${distdir}/aacon-source.jar"/>
	
	
	
	<!-- add libraries -->
	<path id="lib.classpath">
		<fileset dir="${lib.path}">
			<include name="*.jar" />
		</fileset>
	</path>
	
	<target name="compile" depends="clean">
		<javac srcdir="${basedir}/src" destdir="${classes}" target="1.5"
			source="1.5" debug="on" encoding="UTF-8" sourcepath="" >
			<classpath refid="lib.classpath"></classpath>
		</javac>
	</target>

 <!-- Clean temp directories -->
    <target name="clean">
        <delete dir="${classes}" />
        <mkdir dir="${classes}" />
    </target>

<!-- <zipfileset excludes="META-INF/*.SF" src="jarfilename.jar"/> -->
	
	<target name="build-jar" description="Pack utils in a jar" depends="compile">
		<echo>Jar file: ${jar.name}</echo>
		<delete file="${jar.path}" failonerror="false"></delete>
		<jar jarfile="${jar.path}" >
			<zipgroupfileset excludes="META-INF/*.SF" dir="lib" includes="datamodel-1.0.jar"/>
			<fileset dir="${basedir}/bin/" includes="compbio/**" />
			<manifest>
				<attribute name="Built-By" value="Petr V Troshin" />
				<attribute name="Class-Path" value="." />
				<attribute name="Main-Class" value="compbio.conservation.ParallelConservationClient" />
				<attribute name="Implementation-Title" value="AA Conservation calculator" />
				<attribute name="Implementation-Vendor" value="Peter Troshin" />
				<attribute name="Implementation-URL" value="http://www.compbio.dundee.ac.uk/" />
			</manifest>
		</jar>
	</target>

	<target name="source-jar" description="Pack java sources" depends="compile">
			<delete file="${aacon-source-jar}"></delete>
			<jar jarfile="${aacon-source-jar}">
				<fileset dir="${basedir}/src/"> 
					<include name="**"/>
				</fileset>
				<manifest>
					<attribute name="Built-By" value="Peter Troshin" />
					<attribute name="Class-Path" value="." />
					<attribute name="Implementation-Title" value="AACon Source Code Archive" />
					<attribute name="Implementation-Vendor" value="Peter Troshin and Agnieszka Golicz" />
					<attribute name="Implementation-URL" value="http://www.compbio.dundee.ac.uk/aacon" />
				</manifest>
			</jar>
			
	</target>
		
</project>