Merge pull request #94 from NIEHS/0.8.0 #70
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
# also derived from https://github.com/we-cli/coverage-badge-action | |
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
on: | |
push: | |
branches: [main, master] | |
pull_request: | |
branches: [main, master] | |
name: test-coverage-local | |
jobs: | |
test-coverage: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
extra-packages: any::covr, any::DT, any::htmltools | |
needs: coverage | |
- name: Cache C++ and R dependencies | |
uses: actions/cache@v2 | |
with: | |
path: | | |
~/.cache/R | |
~/.local/share/R | |
key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }} | |
restore-keys: | | |
dependencies-${{ runner.os }}- | |
- name: Test coverage | |
run: | | |
Rscript -e "covpack<-covr::package_coverage(install_path='${{ github.workspace }}/cov', clean=FALSE); \ | |
covr::report(covpack, file = file.path('${{ github.workspace }}', 'chopin-coverage-report.html')); \ | |
covd<-covr::coverage_to_list(covpack)$totalcoverage; \ | |
write.table(covd[length(covd)], file = '${{ github.workspace }}/local_cov.Rout', row.names = F, col.names = F)" | |
shell: bash | |
- name: Upload covr report as artifact | |
uses: actions/upload-artifact@v4 | |
with: | |
name: covr-report | |
path: ${{ github.workspace }}/chopin-coverage-report.html | |
- name: Upload workspace dump as artifact if the test fails | |
if: ${{ failure() }} | |
uses: actions/upload-artifact@v4 | |
with: | |
name: test-outputs | |
path: ${{ github.workspace }}/** | |
- name: Get Values | |
id: get-values | |
shell: bash | |
run: | | |
COV=$(cat ${{ github.workspace }}/local_cov.Rout) | |
echo "coverage=$COV" >> $GITHUB_OUTPUT | |
- name: Checkout gh-pages | |
uses: actions/checkout@v4 | |
with: | |
ref: gh-pages | |
- name: Create Badges | |
shell: bash | |
run: | | |
npm i -g badgen-cli | |
export COV=${{ steps.get-values.outputs.coverage }} | |
COLOR=$(node -p '+process.env.COV >= 95 ? `green` : `orange`') | |
mkdir -p badges | |
badgen -j coverage -s $COV% -c $COLOR > badges/coverage.svg | |
- name: Deploy Badges | |
uses: stefanzweifel/git-auto-commit-action@v4 | |
with: | |
commit_message: "Update badges [skip ci]" | |
branch: gh-pages | |
skip_fetch: true | |
skip_checkout: true | |
# Without this, will get Error: | |
# Can't find 'action.yml', 'action.yaml' or 'Dockerfile' under '/home/runner/work/coverage-badge-action/coverage-badge-action/action.yml'. | |
# Did you forget to run actions/checkout before running your local action? | |
- name: Checkout Back | |
uses: actions/checkout@v4 | |
with: | |
ref: ${{ github.ref }} | |
# - name: Upload artifacts | |
# if: always() | |
# uses: actions/upload-artifact@v4 | |
# with: | |
# name: test-outputs | |
# path: ${{ github.workspace }}/** |