Create codecov.yaml

.github/workflows/codecov.yaml

@@ -0,0 +1,62 @@
+name: R Package CI
+
+#on:
+#  push:
+#    branches:
+#      - main
+#  pull_request:
+#    branches:
+#      - main
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v2
+
+    - name: Set up R
+      uses: r-lib/actions/setup-r@v2
+      with:
+        r-version: 4.1  # You can change this to the R version you need
+
+    - name: Cache C++ and R dependencies
+      uses: actions/cache@v2
+      with:
+        path: |
+          ~/.cache/R
+          ~/.local/share/R
+        key: dependencies-${{ runner.os }}-${{ hashFiles('**/DESCRIPTION') }}
+        restore-keys: |
+          dependencies-${{ runner.os }}-
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y libudunits2-dev libgdal-dev
+
+        
+    - name: Install dependencies
+      run: |
+        R -e 'install.packages("remotes")'
+        R -e 'remotes::install_deps()'
+
+    - name: Install dependencies for covr and testthat
+      run: R -e 'install.packages(c("covr", "testthat"), dependencies = TRUE)'
+
+    - name: Run tests and calculate coverage
+      run: |
+        echo "Current working directory: $(pwd)"
+        R -e 'library(covr); covr::package_coverage(coverage_file = "coverage.xml")'
+
+
+    - name: Upload coverage to Codecov
+      uses: codecov/codecov-action@v3
+      with:
+        token: ${{ secrets.CODECOV_TOKEN }}
+        coverage_reports: ${{ github.workspace }}/coverage.xml
+
+    - name: Cleanup
+      run: |
+        R -e 'remove.packages("remotes")'