From 9ca2eae5c6374ff5266257aa249b38bab88be780 Mon Sep 17 00:00:00 2001 From: Insang Song Date: Tue, 3 Oct 2023 12:05:22 -0400 Subject: [PATCH] Directory restructuring - While keeping litr Rmd, others were adjusted - codecov edit to find if it works --- .github/workflows/codecov.yaml | 2 +- {containers => tools/containers}/apptainer_rocker | 0 .../slurm_test}/merra1h_aero_extract.r | 0 .../slurm_test}/merra1h_aero_extract_local.r | 0 .../slurm_test}/merra1h_aero_extract_local_stars.r | 0 .../slurm_test}/terra_runs_Rcode_file copy.sh | 0 .../slurm_test}/terra_runs_Rcode_file.sh | 0 .../tarballs}/scomps_0.0.1.09032023.tar.gz | Bin .../tarballs}/scomps_0.0.2.09152023.tar.gz | Bin .../tarballs}/scomps_0.0.2.09192023.tar.gz | Bin .../tarballs}/scomps_0.0.2.10022023.tar.gz | Bin .../tarballs}/scomps_0.0.2.10032023.tar.gz | Bin .../00_good_practice_parallelization.Rmd | 0 .../01_generate_computational_grid.Rmd | 0 14 files changed, 1 insertion(+), 1 deletion(-) rename {containers => tools/containers}/apptainer_rocker (100%) rename {slurm_test => tools/slurm_test}/merra1h_aero_extract.r (100%) rename {slurm_test => tools/slurm_test}/merra1h_aero_extract_local.r (100%) rename {slurm_test => tools/slurm_test}/merra1h_aero_extract_local_stars.r (100%) rename {slurm_test => tools/slurm_test}/terra_runs_Rcode_file copy.sh (100%) rename {slurm_test => tools/slurm_test}/terra_runs_Rcode_file.sh (100%) rename {tarballs => tools/tarballs}/scomps_0.0.1.09032023.tar.gz (100%) rename {tarballs => tools/tarballs}/scomps_0.0.2.09152023.tar.gz (100%) rename {tarballs => tools/tarballs}/scomps_0.0.2.09192023.tar.gz (100%) rename {tarballs => tools/tarballs}/scomps_0.0.2.10022023.tar.gz (100%) rename {tarballs => tools/tarballs}/scomps_0.0.2.10032023.tar.gz (100%) rename {vignettes-sources => tools/vignettes-sources}/00_good_practice_parallelization.Rmd (100%) rename {vignettes-sources => tools/vignettes-sources}/01_generate_computational_grid.Rmd (100%) diff --git a/.github/workflows/codecov.yaml b/.github/workflows/codecov.yaml index 30ba6e81..779871b8 100644 --- a/.github/workflows/codecov.yaml +++ b/.github/workflows/codecov.yaml @@ -27,7 +27,7 @@ jobs: path: | ~/.cache/R ~/.local/share/R - key: dependencies-${{ runner.os }}-${{ hashFiles('**/scomps/DESCRIPTION') }} + key: dependencies-${{ runner.os }}-${{ hashFiles('**/**/DESCRIPTION') }} restore-keys: | dependencies-${{ runner.os }}- diff --git a/containers/apptainer_rocker b/tools/containers/apptainer_rocker similarity index 100% rename from containers/apptainer_rocker rename to tools/containers/apptainer_rocker diff --git a/slurm_test/merra1h_aero_extract.r b/tools/slurm_test/merra1h_aero_extract.r similarity index 100% rename from slurm_test/merra1h_aero_extract.r rename to tools/slurm_test/merra1h_aero_extract.r diff --git a/slurm_test/merra1h_aero_extract_local.r b/tools/slurm_test/merra1h_aero_extract_local.r similarity index 100% rename from slurm_test/merra1h_aero_extract_local.r rename to tools/slurm_test/merra1h_aero_extract_local.r diff --git a/slurm_test/merra1h_aero_extract_local_stars.r b/tools/slurm_test/merra1h_aero_extract_local_stars.r similarity index 100% rename from slurm_test/merra1h_aero_extract_local_stars.r rename to tools/slurm_test/merra1h_aero_extract_local_stars.r diff --git a/slurm_test/terra_runs_Rcode_file copy.sh b/tools/slurm_test/terra_runs_Rcode_file copy.sh similarity index 100% rename from slurm_test/terra_runs_Rcode_file copy.sh rename to tools/slurm_test/terra_runs_Rcode_file copy.sh diff --git a/slurm_test/terra_runs_Rcode_file.sh b/tools/slurm_test/terra_runs_Rcode_file.sh similarity index 100% rename from slurm_test/terra_runs_Rcode_file.sh rename to tools/slurm_test/terra_runs_Rcode_file.sh diff --git a/tarballs/scomps_0.0.1.09032023.tar.gz b/tools/tarballs/scomps_0.0.1.09032023.tar.gz similarity index 100% rename from tarballs/scomps_0.0.1.09032023.tar.gz rename to tools/tarballs/scomps_0.0.1.09032023.tar.gz diff --git a/tarballs/scomps_0.0.2.09152023.tar.gz b/tools/tarballs/scomps_0.0.2.09152023.tar.gz similarity index 100% rename from tarballs/scomps_0.0.2.09152023.tar.gz rename to tools/tarballs/scomps_0.0.2.09152023.tar.gz diff --git a/tarballs/scomps_0.0.2.09192023.tar.gz b/tools/tarballs/scomps_0.0.2.09192023.tar.gz similarity index 100% rename from tarballs/scomps_0.0.2.09192023.tar.gz rename to tools/tarballs/scomps_0.0.2.09192023.tar.gz diff --git a/tarballs/scomps_0.0.2.10022023.tar.gz b/tools/tarballs/scomps_0.0.2.10022023.tar.gz similarity index 100% rename from tarballs/scomps_0.0.2.10022023.tar.gz rename to tools/tarballs/scomps_0.0.2.10022023.tar.gz diff --git a/tarballs/scomps_0.0.2.10032023.tar.gz b/tools/tarballs/scomps_0.0.2.10032023.tar.gz similarity index 100% rename from tarballs/scomps_0.0.2.10032023.tar.gz rename to tools/tarballs/scomps_0.0.2.10032023.tar.gz diff --git a/vignettes-sources/00_good_practice_parallelization.Rmd b/tools/vignettes-sources/00_good_practice_parallelization.Rmd similarity index 100% rename from vignettes-sources/00_good_practice_parallelization.Rmd rename to tools/vignettes-sources/00_good_practice_parallelization.Rmd diff --git a/vignettes-sources/01_generate_computational_grid.Rmd b/tools/vignettes-sources/01_generate_computational_grid.Rmd similarity index 100% rename from vignettes-sources/01_generate_computational_grid.Rmd rename to tools/vignettes-sources/01_generate_computational_grid.Rmd