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three contigs are connecting by a black line, why? #85

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limin321 opened this issue Jan 7, 2020 · 0 comments
Open

three contigs are connecting by a black line, why? #85

limin321 opened this issue Jan 7, 2020 · 0 comments

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@limin321
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limin321 commented Jan 7, 2020

Screen Shot 2020-01-07 at 11 09 05 AM

Hi ,

Could any one please help me explain what does this visualization mean? the three contigs are connecting to each other by a black line, what does that black line mean?

I actually blast the middle contg against the longest, and it has 4 hits, each hits has 100% match, here is the mach results.

Screen Shot 2020-01-07 at 11 13 12 AM

Does that mean I can just delete the contig in the middle.

However, I blast the top short contig against the longest contig and the middle one, there is no hits at all. if it is a complete independent contig, why they are connected by a black line.

Your help are greatly appreciated. Thanks a lot.

Have a good one.

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