diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 5fc43e02c..b1aca2e7a 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -23,10 +23,11 @@ jobs: steps: - uses: actions/checkout@v3 - - uses: r-lib/actions/setup-tinytex@v1 + - uses: r-lib/actions/setup-tinytex@v2 env: # install full prebuilt version TINYTEX_INSTALLER: TinyTeX + - uses: r-lib/actions/setup-pandoc@v2 - uses: r-lib/actions/setup-r@v2 @@ -41,16 +42,17 @@ jobs: - name: Install system dependencies if: runner.os == 'Linux' run: sudo apt-get install -y ghostscript + - name: Cache some pkgdown assets - uses: actions/cache@v2 + uses: actions/cache@v3 with: path: | vignettes/articles/resources/*.gif vignettes/articles/resources/*.pdf vignettes/articles/cache/*.rds - key: ${{ hashFiles('vignettes/articles/_child_examples.Rmd') }}-2-${{ github.sha }} + key: ${{ hashFiles('vignettes/articles/_child_examples.Rmd') }}-1-${{ github.sha }} restore-keys: | - ${{ hashFiles('vignettes/articles/_child_examples.Rmd') }}-2- + ${{ hashFiles('vignettes/articles/_child_examples.Rmd') }}-1- - name: Build pkgdown site run: pkgdown::build_site(new_process = FALSE, install = FALSE) diff --git a/README.Rmd b/README.Rmd index 3f9750b13..f49bce4cd 100644 --- a/README.Rmd +++ b/README.Rmd @@ -87,51 +87,412 @@ output format and all the assets required by this format. Currently included templates and their contributors are the following: -| Journal | Contributors | Pull request | Output format | -|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------| -| [ACM: Association for Computings Machinery](https://www.acm.org/publications/about-publications) | [\@ramnathv](https://github.com/ramnathv) | [#8](https://github.com/rstudio/rticles/pull/8) | `acm_article()` | -| ACS `https://pubs.acs.org` | [\@yufree](https://github.com/yufree) | [#15](https://github.com/rstudio/rticles/pull/15) | `acs_article()` | -| [AEA: American Economic Association](https://www.aeaweb.org/journals/policies/templates) | [\@sboysel](https://github.com/sboysel) | [#86](https://github.com/rstudio/rticles/pull/86) | `aea_articles()` | -| AGU `https://agupubs.onlinelibrary.wiley.com/` | [\@eliocamp](https://github.com/eliocamp) | [#199](https://github.com/rstudio/rticles/pull/199) | `agu_article()` | -| [AJS: Austrian Journal of Statistics](https://www.ajs.or.at) | [\@matthias-da](https://github.com/matthias-da) | [#437](https://github.com/rstudio/rticles/pull/437) | `ajs_article()` | -| [AMS: American Meteorological Society](https://www.ametsoc.org/) | [\@yufree](https://github.com/yufree) | [#96](https://github.com/rstudio/rticles/pull/96) | `ams_article()` | -| ASA: American Statistical Association `https://www.amstat.org/` | | [#111](https://github.com/rstudio/rticles/pull/111) | `asa_article()` | -| [arXiv](https://arxiv.org/) pre-prints based on George Kour's template | [\@alexpghayes](https://github.com) | [#236](https://github.com/rstudio/rticles/pull/236) | `arxiv_article()` | -| [Bioinformatics](https://academic.oup.com/bioinformatics) | [\@ShixiangWang](https://github.com/ShixiangWang) | [#297](https://github.com/rstudio/rticles/pull/297) | `bioinformatics_article()` | -| [Biometrics](https://biometrics.biometricsociety.org) | [\@daltonhance](https://github.com/daltonhance) | [#170](https://github.com/rstudio/rticles/pull/170) | `biometrics_article()` | -| [Bulletin de l'AMQ](https://www.amq.math.ca/bulletin/) | [\@desautm](https://github.com/desautm) | [#145](https://github.com/rstudio/rticles/pull/145) | `amq_article()` | -| [Copernicus Publications](https://publications.copernicus.org) | [\@nuest](https://github.com/nuest), [\@RLumSK](https://github.com/RLumSK) | [#172](https://github.com/rstudio/rticles/pull/172), [#342](https://github.com/rstudio/rticles/pull/342) | `copernicus_article()` | -| [CTeX](https://ctan.org/pkg/ctex) | | | `ctex()` | -| [Elsevier](https://www.elsevier.com) | [\@cboettig](https://github.com/cboettig), [\@robjhyndman](https://github.com/robjhyndman) | [#27](https://github.com/rstudio/rticles/pull/27), [#467](https://github.com/rstudio/rticles/pull/467) | `elsevier_article()` | -| [Frontiers](https://www.frontiersin.org/) | [\@muschellij2](https://github.com/muschellij2) | [#211](https://github.com/rstudio/rticles/pull/211) | `frontiers_article()` | -| [Glossa](https://www.glossa-journal.org) | [\@stefanocoretta](https://github.com/stefanocoretta) | [#361](https://github.com/rstudio/rticles/pull/361) | `glossa_article()` | -| [IEEE Transaction](http://www.ieee.org/publications_standards/publications/authors/author_templates.html) | [\@Emaasit](https://github.com/Emaasit), [\@espinielli](https://github.com/espinielli), [\@nathanweeks](https://github.com/nathanweeks), [\@DunLug](https://github.com/DunLug) | [#97](https://github.com/rstudio/rticles/pull/97), [#169](https://github.com/rstudio/rticles/pull/169), [#227](https://github.com/rstudio/rticles/pull/227), [#263](https://github.com/rstudio/rticles/pull/263), [#264](https://github.com/rstudio/rticles/pull/264), [#265](https://github.com/rstudio/rticles/pull/265) | `ieee_article()` | -| [IMS: Institute of Mathematical Statistics](https://imstat.org/) [AoAS: Annals of Applied Statistics](https://imstat.org/journals-and-publications/annals-of-applied-statistics/) | [\@auzaheta](https://github.com/auzaheta) | [#372](https://github.com/rstudio/rticles/pull/372) | `ims_article()` | -| [INFORMS: Institute for Operations Research and the Management Sciences](https://www.informs.org/) | [\@robjhyndman](https://github.com/robjhyndman) | [#460](https://github.com/rstudio/rticles/pull/460) | `informs_article()` | -| [ISBA: International Society for Bayesian Analysis](https://bayesian.org/) | [\@dmi3nko](https://github.com/dmi3kno) | [#461](https://github.com/rstudio/rticles/pull/461) | `isba_article()` | -| IOP: Institute of Physics (`https://iopscience.iop.org`) | [\@robjhyndman](https://github.com/robjhyndman) | [#462](https://github.com/rstudio/rticles/pull/462) | `iop_article()` | -| [JASA: Journal of the Acoustical Society of America](https://pubs.aip.org/asa/jasa) | [\@stefanocoretta](https://github.com/stefanocoretta) | [#364](https://github.com/rstudio/rticles/pull/364) | `jasa_article()` | -| [Journal of Educational Data Mining](https://jedm.educationaldatamining.org/index.php/JEDM/about/submissions) journal submissions | [\@jooyoungseo](https://github.com/jooyoungseo) | [#251](https://github.com/rstudio/rticles/pull/251) | `jedm_article()` | -| [JOSS: Journal of Open Source Software](https://joss.theoj.org/) [JOSE: Journal of Open Source Education](https://jose.theoj.org/) | [\@noamross](https://github.com/noamross) | [#229](https://github.com/rstudio/rticles/pull/229) | `joss_article()` | -| [JSS: Journal of Statistical Software](https://www.jstatsoft.org/index) | | | `jss_article()` | -| [LIPIcs](https://www.dagstuhl.de/en/publishing/series/details/lipics) | [\@nuest](https://github.com/nuest) | [#288](https://github.com/rstudio/rticles/pull/288) | `lipics_article()` | -| [MDPI](https://www.mdpi.com) | [\@dleutnant](https://github.com/dleutnant), [\@mps9506](https://github.com/mps9506) | [#147](https://github.com/rstudio/rticles/pull/147), [#515](https://github.com/rstudio/rticles/pull/515) | `mdpi_article()` | -| [MNRAS: Monthly Notices of the Royal Astronomical Society](https://academic.oup.com/mnras) | [\@oleskiewicz](https://github.com/oleskiewicz) | [#175](https://github.com/rstudio/rticles/pull/175) | `mnras_article()` | -| [OUP: Oxford University Press](https://academic.oup.com/pages/authoring/journals/preparing_your_manuscript) | [\@dmkaplan](https://github.com/dmkaplan) | [#284](https://github.com/rstudio/rticles/pull/284) | `oup_articles()` | -| [PeerJ: Journal of Life and Environmental Sciences](https://peerj.com) | [\@zkamvar](https://github.com/zkamvar) | [#127](https://github.com/rstudio/rticles/pull/127) | `peerj_article()` | -| [PiHPh: Papers in Historical Phonology](http://journals.ed.ac.uk/pihph/about/submissions) | [\@stefanocoretta](https://github.com/stefanocoretta) | [#362](https://github.com/rstudio/rticles/pull/362) | `pihph_article()` | -| [PLOS](https://plos.org/#journals) | [\@sjmgarnier](https://github.com/sjmgarnier) | [#12](https://github.com/rstudio/rticles/pull/12) | `plos_article()` | -| [PNAS: Proceedings of the National Academy of Sciences](https://www.pnas.org/) | [\@cboettig](https://github.com/cboettig) | [#72](https://github.com/rstudio/rticles/pull/72) | `pnas_article()` | -| RSOS: Royal Society Open Science `https://www.royalsocietypublishing.org/journal/rsos` | [\@ThierryO](https://github.com/ThierryO) | [#135](https://github.com/rstudio/rticles/pull/135) | `rsos_article()` | -| [RSS: Royal Statistical Society](https://rss.org.uk/) | [\@carlganz](https://github.com/carlganz) | [#110](https://github.com/rstudio/rticles/pull/110) | `rss_article()` | -| [Sage](https://uk.sagepub.com/en-gb/eur/manuscript-submission-guidelines) | [\@oguzhanogreden](https://github.com/oguzhanogreden) | [#181](https://github.com/rstudio/rticles/pull/181) | `sage_article()` | -| [Springer](https://www.springernature.com/gp/authors/campaigns/latex-author-support) | [\@strakaps](https://github.com/strakaps) | [#164](https://github.com/rstudio/rticles/pull/164) | `springer_article()` | -| [Springer Lecture Notes in Computer Science (LCNS)](https://www.springer.com/gp/computer-science/lncs/conference-proceedings-guidelines) | [\@eliocamp](https://github.com/eliocamp/) | [#445](https://github.com/rstudio/rticles/issues/445) | `lncs_article()` | -| SIM: Statistics in Medicine `https://onlinelibrary.wiley.com/journal/10970258)` | [\@ellessenne](https://github.com/ellessenne) | [#231](https://github.com/rstudio/rticles/pull/231) | `sim_article()` | -| [Taylor & Francis](https://www.tandfonline.com/) | [\@dleutnant](https://github.com/dleutnant) | [#218](https://github.com/rstudio/rticles/pull/218) | `tf_article()` | -| [The R Journal](https://journal.r-project.org/) | | | `rjournal_article()` | -| [TRB](https://trb.secure-platform.com/a/page/TRBPaperReview) | [\@gregmacfarlane](https://github.com/gregmacfarlane) | [#427](https://github.com/rstudio/rticles/pull/427) | `trb_article()` | -| [Wellcome Open Research](https://wellcomeopenresearch.org) | [\@arnold-c](https://github.com/arnold-c) | [#436](https://github.com/rstudio/rticles/pull/436) | `wellcomeor_article()` | ++-------------+-------------+---------------------------+-------------+ +| Journal | C | Pull request | Output | +| | ontributors | | format | ++=============+=============+===========================+=============+ +| [ACM: | [\@ramna | [#8](https://github.co | `acm | +| Association | thv](https: | m/rstudio/rticles/pull/8) | _article()` | +| for | //github.co | | | +| Computings | m/ramnathv) | | | +| Machiner | | | | +| y](https:// | | | | +| www.acm.org | | | | +| /publicatio | | | | +| ns/about-pu | | | | +| blications) | | | | ++-------------+-------------+---------------------------+-------------+ +| ACS | [\@y | [#15](https://github.com | `acs | +| `https://pu | ufree](http | /rstudio/rticles/pull/15) | _article()` | +| bs.acs.org` | s://github. | | | +| | com/yufree) | | | ++-------------+-------------+---------------------------+-------------+ +| [AEA: | [\@sbo | [#86](https://github.com | `aea_ | +| American | ysel](https | /rstudio/rticles/pull/86) | articles()` | +| Economic | ://github.c | | | +| Associati | om/sboysel) | | | +| on](https:/ | | | | +| /www.aeaweb | | | | +| .org/journa | | | | +| ls/policies | | | | +| /templates) | | | | ++-------------+-------------+---------------------------+-------------+ +| AGU | [\@elioc | [ | `agu | +| `https:// | amp](https: | #199](https://github.com/ | _article()` | +| agupubs.onl | //github.co | rstudio/rticles/pull/199) | | +| inelibrary. | m/eliocamp) | | | +| wiley.com/` | | | | ++-------------+-------------+---------------------------+-------------+ +| [AJS: | [\@ | [ | `ajs | +| Austrian | matthias-da | #437](https://github.com/ | _article()` | +| Journal of | ](https://g | rstudio/rticles/pull/437) | | +| S | ithub.com/m | | | +| tatistics]( | atthias-da) | | | +| https://www | | | | +| .ajs.or.at) | | | | ++-------------+-------------+---------------------------+-------------+ +| [AMS: | [\@y | [#96](https://github.com | `ams | +| American | ufree](http | /rstudio/rticles/pull/96) | _article()` | +| Met | s://github. | | | +| eorological | com/yufree) | | | +| S | | | | +| ociety](htt | | | | +| ps://www.am | | | | +| etsoc.org/) | | | | ++-------------+-------------+---------------------------+-------------+ +| ASA: | | [ | `asa | +| American | | #111](https://github.com/ | _article()` | +| Statistical | | rstudio/rticles/pull/111) | | +| Association | | | | +| `ht | | | | +| tps://www.a | | | | +| mstat.org/` | | | | ++-------------+-------------+---------------------------+-------------+ +| [arXi | [\ | [ | `arxiv | +| v](https:// | @alexpghaye | #236](https://github.com/ | _article()` | +| arxiv.org/) | s](https:// | rstudio/rticles/pull/236) | | +| pre-prints | github.com) | | | +| based on | | | | +| George | | | | +| Kour's | | | | +| template | | | | ++-------------+-------------+---------------------------+-------------+ +| [B | [\@Sh | [ | `bio | +| ioinformati | ixiangWang] | #297](https://github.com/ | informatics | +| cs](https:/ | (https://gi | rstudio/rticles/pull/297) | _article()` | +| /academic.o | thub.com/Sh | | | +| up.com/bioi | ixiangWang) | | | +| nformatics) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Biometri | [\@ | [ | `biometrics | +| cs](https:/ | daltonhance | #170](https://github.com/ | _article()` | +| /biometrics | ](https://g | rstudio/rticles/pull/170) | | +| .biometrics | ithub.com/d | | | +| ociety.org) | altonhance) | | | ++-------------+-------------+---------------------------+-------------+ +| [Bulletin | [\@des | [ | `amq | +| de | autm](https | #145](https://github.com/ | _article()` | +| l'AMQ](h | ://github.c | rstudio/rticles/pull/145) | | +| ttps://www. | om/desautm) | | | +| amq.math.ca | | | | +| /bulletin/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Copernicus | [\@ | [# | `copernicus | +| Public | nuest](http | 172](https://github.com/r | _article()` | +| ations](htt | s://github. | studio/rticles/pull/172), | | +| ps://public | com/nuest), | [ | | +| ations.cope | [\@R | #342](https://github.com/ | | +| rnicus.org) | LumSK](http | rstudio/rticles/pull/342) | | +| | s://github. | | | +| | com/RLumSK) | | | ++-------------+-------------+---------------------------+-------------+ +| [CTeX](http | | | `ctex()` | +| s://ctan.or | | | | +| g/pkg/ctex) | | | | ++-------------+-------------+---------------------------+-------------+ +| [El | [\@cboett | [#27](https://github.com/ | `elsevier | +| sevier](htt | ig](https:/ | rstudio/rticles/pull/27), | _article()` | +| ps://www.el | /github.com | [ | | +| sevier.com) | /cboettig), | #467](https://github.com/ | | +| | [\@ | rstudio/rticles/pull/467) | | +| | robjhyndman | | | +| | ](https://g | | | +| | ithub.com/r | | | +| | objhyndman) | | | ++-------------+-------------+---------------------------+-------------+ +| [Frontie | [\@ | [ | `frontiers | +| rs](https:/ | muschellij2 | #211](https://github.com/ | _article()` | +| /www.fronti | ](https://g | rstudio/rticles/pull/211) | | +| ersin.org/) | ithub.com/m | | | +| | uschellij2) | | | ++-------------+-------------+---------------------------+-------------+ +| [Glossa | [\@stefan | [ | `glossa | +| ](https://w | ocoretta](h | #361](https://github.com/ | _article()` | +| ww.glossa-j | ttps://gith | rstudio/rticles/pull/361) | | +| ournal.org) | ub.com/stef | | | +| | anocoretta) | | | ++-------------+-------------+---------------------------+-------------+ +| [IEEE | [\@Emaa | [#97](https://github.com/ | `ieee | +| Transaction | sit](https: | rstudio/rticles/pull/97), | _article()` | +| ](http://ww | //github.co | [# | | +| w.ieee.org/ | m/Emaasit), | 169](https://github.com/r | | +| publication | [\ | studio/rticles/pull/169), | | +| s_standards | @espinielli | [# | | +| /publicatio | ](https://g | 227](https://github.com/r | | +| ns/authors/ | ithub.com/e | studio/rticles/pull/227), | | +| author_temp | spinielli), | [# | | +| lates.html) | [\@n | 263](https://github.com/r | | +| | athanweeks] | studio/rticles/pull/263), | | +| | (https://gi | [# | | +| | thub.com/na | 264](https://github.com/r | | +| | thanweeks), | studio/rticles/pull/264), | | +| | [\@D | [ | | +| | unLug](http | #265](https://github.com/ | | +| | s://github. | rstudio/rticles/pull/265) | | +| | com/DunLug) | | | ++-------------+-------------+---------------------------+-------------+ +| [IMS: | [\@auzah | [ | `ims | +| Institute | eta](https: | #372](https://github.com/ | _article()` | +| of | //github.co | rstudio/rticles/pull/372) | | +| M | m/auzaheta) | | | +| athematical | | | | +| Statistics | | | | +| ](https://i | | | | +| mstat.org/) | | | | +| [AoAS: | | | | +| Annals of | | | | +| Applied | | | | +| Statistics | | | | +| ](https://i | | | | +| mstat.org/j | | | | +| ournals-and | | | | +| -publicatio | | | | +| ns/annals-o | | | | +| f-applied-s | | | | +| tatistics/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [INFORMS: | [\@ | [ | `informs | +| Institute | robjhyndman | #460](https://github.com/ | _article()` | +| for | ](https://g | rstudio/rticles/pull/460) | | +| Operations | ithub.com/r | | | +| Research | objhyndman) | | | +| and the | | | | +| Management | | | | +| Sc | | | | +| iences](htt | | | | +| ps://www.in | | | | +| forms.org/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [ISBA: | [\@dmi | [ | `isba | +| In | 3nko](https | #461](https://github.com/ | _article()` | +| ternational | ://github.c | rstudio/rticles/pull/461) | | +| Society for | om/dmi3kno) | | | +| Bayesian | | | | +| Analysis]( | | | | +| https://bay | | | | +| esian.org/) | | | | ++-------------+-------------+---------------------------+-------------+ +| IOP: | [\@ | [ | `iop | +| Institute | robjhyndman | #462](https://github.com/ | _article()` | +| of Physics | ](https://g | rstudio/rticles/pull/462) | | +| (`https: | ithub.com/r | | | +| //iopscienc | objhyndman) | | | +| e.iop.org`) | | | | ++-------------+-------------+---------------------------+-------------+ +| [JASA: | [\@stefan | [ | `jasa | +| Journal of | ocoretta](h | #364](https://github.com/ | _article()` | +| the | ttps://gith | rstudio/rticles/pull/364) | | +| Acoustical | ub.com/stef | | | +| Society of | anocoretta) | | | +| Americ | | | | +| a](https:// | | | | +| pubs.aip.or | | | | +| g/asa/jasa) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Journal of | [\@ | [ | `jedm | +| Educational | jooyoungseo | #251](https://github.com/ | _article()` | +| Data | ](https://g | rstudio/rticles/pull/251) | | +| Min | ithub.com/j | | | +| ing](https: | ooyoungseo) | | | +| //jedm.educ | | | | +| ationaldata | | | | +| mining.org/ | | | | +| index.php/J | | | | +| EDM/about/s | | | | +| ubmissions) | | | | +| journal | | | | +| submissions | | | | ++-------------+-------------+---------------------------+-------------+ +| [JOSS: | [\@noamr | [ | `joss | +| Journal of | oss](https: | #229](https://github.com/ | _article()` | +| Open Source | //github.co | rstudio/rticles/pull/229) | | +| S | m/noamross) | | | +| oftware](ht | | | | +| tps://joss. | | | | +| theoj.org/) | | | | +| [JOSE: | | | | +| Journal of | | | | +| Open Source | | | | +| Ed | | | | +| ucation](ht | | | | +| tps://jose. | | | | +| theoj.org/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [JSS: | | | `jss | +| Journal of | | | _article()` | +| Statistical | | | | +| Software] | | | | +| (https://ww | | | | +| w.jstatsoft | | | | +| .org/index) | | | | ++-------------+-------------+---------------------------+-------------+ +| [LI | [\ | [ | `lipics | +| PIcs](https | @nuest](htt | #288](https://github.com/ | _article()` | +| ://www.dags | ps://github | rstudio/rticles/pull/288) | | +| tuhl.de/en/ | .com/nuest) | | | +| publishing/ | | | | +| series/deta | | | | +| ils/lipics) | | | | ++-------------+-------------+---------------------------+-------------+ +| [MDPI] | [\@dleutnan | [# | `mdpi | +| (https://ww | t](https:// | 147](https://github.com/r | _article()` | +| w.mdpi.com) | github.com/ | studio/rticles/pull/147), | | +| | dleutnant), | [ | | +| | [\@mps | #515](https://github.com/ | | +| | 9506](https | rstudio/rticles/pull/515) | | +| | ://github.c | | | +| | om/mps9506) | | | ++-------------+-------------+---------------------------+-------------+ +| [MNRAS: | [\@ | [ | `mnras | +| Monthly | oleskiewicz | #175](https://github.com/ | _article()` | +| Notices of | ](https://g | rstudio/rticles/pull/175) | | +| the Royal | ithub.com/o | | | +| A | leskiewicz) | | | +| stronomical | | | | +| Society | | | | +| ](https://a | | | | +| cademic.oup | | | | +| .com/mnras) | | | | ++-------------+-------------+---------------------------+-------------+ +| [OUP: | [\@dmkap | [ | `oup_ | +| Oxford | lan](https: | #284](https://github.com/ | articles()` | +| University | //github.co | rstudio/rticles/pull/284) | | +| Press] | m/dmkaplan) | | | +| (https://ac | | | | +| ademic.oup. | | | | +| com/pages/a | | | | +| uthoring/jo | | | | +| urnals/prep | | | | +| aring_your_ | | | | +| manuscript) | | | | ++-------------+-------------+---------------------------+-------------+ +| [PeerJ: | [\@zka | [ | `peerj | +| Journal of | mvar](https | #127](https://github.com/ | _article()` | +| Life and | ://github.c | rstudio/rticles/pull/127) | | +| En | om/zkamvar) | | | +| vironmental | | | | +| Scienc | | | | +| es](https:/ | | | | +| /peerj.com) | | | | ++-------------+-------------+---------------------------+-------------+ +| [PiHPh: | [\@stefan | [ | `pihph | +| Papers in | ocoretta](h | #362](https://github.com/ | _article()` | +| Historical | ttps://gith | rstudio/rticles/pull/362) | | +| Phono | ub.com/stef | | | +| logy](http: | anocoretta) | | | +| //journals. | | | | +| ed.ac.uk/pi | | | | +| hph/about/s | | | | +| ubmissions) | | | | ++-------------+-------------+---------------------------+-------------+ +| [ | [ | [#12](https://github.com | `plos | +| PLOS](https | \@sjmgarnie | /rstudio/rticles/pull/12) | _article()` | +| ://plos.org | r](https:// | | | +| /#journals) | github.com/ | | | +| | sjmgarnier) | | | ++-------------+-------------+---------------------------+-------------+ +| [PNAS: | [\@cboet | [#72](https://github.com | `pnas | +| Proceedings | tig](https: | /rstudio/rticles/pull/72) | _article()` | +| of the | //github.co | | | +| National | m/cboettig) | | | +| Academy of | | | | +| Sciences]( | | | | +| https://www | | | | +| .pnas.org/) | | | | ++-------------+-------------+---------------------------+-------------+ +| RSOS: Royal | [\@Thier | [ | `rsos | +| Society | ryO](https: | #135](https://github.com/ | _article()` | +| Open | //github.co | rstudio/rticles/pull/135) | | +| Science | m/ThierryO) | | | +| `https:// | | | | +| www.royalso | | | | +| cietypublis | | | | +| hing.org/jo | | | | +| urnal/rsos` | | | | ++-------------+-------------+---------------------------+-------------+ +| [RSS: Royal | [\@carlg | [ | `rss | +| Statistical | anz](https: | #110](https://github.com/ | _article()` | +| Society | //github.co | rstudio/rticles/pull/110) | | +| ](https://r | m/carlganz) | | | +| ss.org.uk/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Sage]( | [\@oguzha | [ | `sage | +| https://uk. | nogreden](h | #181](https://github.com/ | _article()` | +| sagepub.com | ttps://gith | rstudio/rticles/pull/181) | | +| /en-gb/eur/ | ub.com/oguz | | | +| manuscript- | hanogreden) | | | +| submission- | | | | +| guidelines) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Spring | [\@strak | [ | `springer | +| er](https:/ | aps](https: | #164](https://github.com/ | _article()` | +| /www.spring | //github.co | rstudio/rticles/pull/164) | | +| ernature.co | m/strakaps) | | | +| m/gp/author | | | | +| s/campaigns | | | | +| /latex-auth | | | | +| or-support) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Springer | [\@elioca | [#4 | `lncs | +| Lecture | mp](https:/ | 45](https://github.com/rs | _article()` | +| Notes in | /github.com | tudio/rticles/issues/445) | | +| Computer | /eliocamp/) | | | +| Science | | | | +| (LCN | | | | +| S)](https:/ | | | | +| /www.spring | | | | +| er.com/gp/c | | | | +| omputer-sci | | | | +| ence/lncs/c | | | | +| onference-p | | | | +| roceedings- | | | | +| guidelines) | | | | ++-------------+-------------+---------------------------+-------------+ +| SIM: | [ | [ | `sim | +| Statistics | \@ellessenn | #231](https://github.com/ | _article()` | +| in Medicine | e](https:// | rstudio/rticles/pull/231) | | +| `https: | github.com/ | | | +| //onlinelib | ellessenne) | | | +| rary.wiley. | | | | +| com/journal | | | | +| /10970258)` | | | | ++-------------+-------------+---------------------------+-------------+ +| [Taylor & | [\@dleutna | [ | `tf | +| Franc | nt](https:/ | #218](https://github.com/ | _article()` | +| is](https:/ | /github.com | rstudio/rticles/pull/218) | | +| /www.tandfo | /dleutnant) | | | +| nline.com/) | | | | ++-------------+-------------+---------------------------+-------------+ +| [The R | | | Use | +| Journal | | | [ | +| ](https://j | | | **rjtools** | +| ournal.r-pr | | | ](https://r | +| oject.org/) | | | journal.git | +| | | | hub.io/rjto | +| | | | ols/article | +| | | | s/create_ar | +| | | | ticle.html) | +| | | | package now | +| | | | | +| | | | `rjournal | +| | | | _article()` | +| | | | ( | +| | | | deprecated) | ++-------------+-------------+---------------------------+-------------+ +| [TRB] | [\@gregma | [ | `trb | +| (https://tr | cfarlane](h | #427](https://github.com/ | _article()` | +| b.secure-pl | ttps://gith | rstudio/rticles/pull/427) | | +| atform.com/ | ub.com/greg | | | +| a/page/TRBP | macfarlane) | | | +| aperReview) | | | | ++-------------+-------------+---------------------------+-------------+ +| [Wellcome | [\@arnol | [ | `wellcomeor | +| Open | d-c](https: | #436](https://github.com/ | _article()` | +| Research]( | //github.co | rstudio/rticles/pull/436) | | +| https://wel | m/arnold-c) | | | +| lcomeopenre | | | | +| search.org) | | | | ++-------------+-------------+---------------------------+-------------+ You can also get the list of available journal names with `rticles::journals()`. diff --git a/README.md b/README.md index bf3a1e081..71053bcf6 100644 --- a/README.md +++ b/README.md @@ -74,51 +74,395 @@ output format and all the assets required by this format. Currently included templates and their contributors are the following: -| Journal | Contributors | Pull request | Output format | -|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------| -| [ACM: Association for Computings Machinery](https://www.acm.org/publications/about-publications) | [@ramnathv](https://github.com/ramnathv) | [\#8](https://github.com/rstudio/rticles/pull/8) | `acm_article()` | -| ACS `https://pubs.acs.org` | [@yufree](https://github.com/yufree) | [\#15](https://github.com/rstudio/rticles/pull/15) | `acs_article()` | -| [AEA: American Economic Association](https://www.aeaweb.org/journals/policies/templates) | [@sboysel](https://github.com/sboysel) | [\#86](https://github.com/rstudio/rticles/pull/86) | `aea_articles()` | -| AGU `https://agupubs.onlinelibrary.wiley.com/` | [@eliocamp](https://github.com/eliocamp) | [\#199](https://github.com/rstudio/rticles/pull/199) | `agu_article()` | -| [AJS: Austrian Journal of Statistics](https://www.ajs.or.at) | [@matthias-da](https://github.com/matthias-da) | [\#437](https://github.com/rstudio/rticles/pull/437) | `ajs_article()` | -| [AMS: American Meteorological Society](https://www.ametsoc.org/) | [@yufree](https://github.com/yufree) | [\#96](https://github.com/rstudio/rticles/pull/96) | `ams_article()` | -| ASA: American Statistical Association `https://www.amstat.org/` | | [\#111](https://github.com/rstudio/rticles/pull/111) | `asa_article()` | -| [arXiv](https://arxiv.org/) pre-prints based on George Kour’s template | [@alexpghayes](https://github.com) | [\#236](https://github.com/rstudio/rticles/pull/236) | `arxiv_article()` | -| [Bioinformatics](https://academic.oup.com/bioinformatics) | [@ShixiangWang](https://github.com/ShixiangWang) | [\#297](https://github.com/rstudio/rticles/pull/297) | `bioinformatics_article()` | -| [Biometrics](https://biometrics.biometricsociety.org) | [@daltonhance](https://github.com/daltonhance) | [\#170](https://github.com/rstudio/rticles/pull/170) | `biometrics_article()` | -| [Bulletin de l’AMQ](https://www.amq.math.ca/bulletin/) | [@desautm](https://github.com/desautm) | [\#145](https://github.com/rstudio/rticles/pull/145) | `amq_article()` | -| [Copernicus Publications](https://publications.copernicus.org) | [@nuest](https://github.com/nuest), [@RLumSK](https://github.com/RLumSK) | [\#172](https://github.com/rstudio/rticles/pull/172), [\#342](https://github.com/rstudio/rticles/pull/342) | `copernicus_article()` | -| [CTeX](https://ctan.org/pkg/ctex) | | | `ctex()` | -| [Elsevier](https://www.elsevier.com) | [@cboettig](https://github.com/cboettig), [@robjhyndman](https://github.com/robjhyndman) | [\#27](https://github.com/rstudio/rticles/pull/27), [\#467](https://github.com/rstudio/rticles/pull/467) | `elsevier_article()` | -| [Frontiers](https://www.frontiersin.org/) | [@muschellij2](https://github.com/muschellij2) | [\#211](https://github.com/rstudio/rticles/pull/211) | `frontiers_article()` | -| [Glossa](https://www.glossa-journal.org) | [@stefanocoretta](https://github.com/stefanocoretta) | [\#361](https://github.com/rstudio/rticles/pull/361) | `glossa_article()` | -| [IEEE Transaction](http://www.ieee.org/publications_standards/publications/authors/author_templates.html) | [@Emaasit](https://github.com/Emaasit), [@espinielli](https://github.com/espinielli), [@nathanweeks](https://github.com/nathanweeks), [@DunLug](https://github.com/DunLug) | [\#97](https://github.com/rstudio/rticles/pull/97), [\#169](https://github.com/rstudio/rticles/pull/169), [\#227](https://github.com/rstudio/rticles/pull/227), [\#263](https://github.com/rstudio/rticles/pull/263), [\#264](https://github.com/rstudio/rticles/pull/264), [\#265](https://github.com/rstudio/rticles/pull/265) | `ieee_article()` | -| [IMS: Institute of Mathematical Statistics](https://imstat.org/) [AoAS: Annals of Applied Statistics](https://imstat.org/journals-and-publications/annals-of-applied-statistics/) | [@auzaheta](https://github.com/auzaheta) | [\#372](https://github.com/rstudio/rticles/pull/372) | `ims_article()` | -| [INFORMS: Institute for Operations Research and the Management Sciences](https://www.informs.org/) | [@robjhyndman](https://github.com/robjhyndman) | [\#460](https://github.com/rstudio/rticles/pull/460) | `informs_article()` | -| [ISBA: International Society for Bayesian Analysis](https://bayesian.org/) | [@dmi3nko](https://github.com/dmi3kno) | [\#461](https://github.com/rstudio/rticles/pull/461) | `isba_article()` | -| IOP: Institute of Physics (`https://iopscience.iop.org`) | [@robjhyndman](https://github.com/robjhyndman) | [\#462](https://github.com/rstudio/rticles/pull/462) | `iop_article()` | -| [JASA: Journal of the Acoustical Society of America](https://pubs.aip.org/asa/jasa) | [@stefanocoretta](https://github.com/stefanocoretta) | [\#364](https://github.com/rstudio/rticles/pull/364) | `jasa_article()` | -| [Journal of Educational Data Mining](https://jedm.educationaldatamining.org/index.php/JEDM/about/submissions) journal submissions | [@jooyoungseo](https://github.com/jooyoungseo) | [\#251](https://github.com/rstudio/rticles/pull/251) | `jedm_article()` | -| [JOSS: Journal of Open Source Software](https://joss.theoj.org/) [JOSE: Journal of Open Source Education](https://jose.theoj.org/) | [@noamross](https://github.com/noamross) | [\#229](https://github.com/rstudio/rticles/pull/229) | `joss_article()` | -| [JSS: Journal of Statistical Software](https://www.jstatsoft.org/index) | | | `jss_article()` | -| [LIPIcs](https://www.dagstuhl.de/en/publishing/series/details/lipics) | [@nuest](https://github.com/nuest) | [\#288](https://github.com/rstudio/rticles/pull/288) | `lipics_article()` | -| [MDPI](https://www.mdpi.com) | [@dleutnant](https://github.com/dleutnant), [@mps9506](https://github.com/mps9506) | [\#147](https://github.com/rstudio/rticles/pull/147), [\#515](https://github.com/rstudio/rticles/pull/515) | `mdpi_article()` | -| [MNRAS: Monthly Notices of the Royal Astronomical Society](https://academic.oup.com/mnras) | [@oleskiewicz](https://github.com/oleskiewicz) | [\#175](https://github.com/rstudio/rticles/pull/175) | `mnras_article()` | -| [OUP: Oxford University Press](https://academic.oup.com/pages/authoring/journals/preparing_your_manuscript) | [@dmkaplan](https://github.com/dmkaplan) | [\#284](https://github.com/rstudio/rticles/pull/284) | `oup_articles()` | -| [PeerJ: Journal of Life and Environmental Sciences](https://peerj.com) | [@zkamvar](https://github.com/zkamvar) | [\#127](https://github.com/rstudio/rticles/pull/127) | `peerj_article()` | -| [PiHPh: Papers in Historical Phonology](http://journals.ed.ac.uk/pihph/about/submissions) | [@stefanocoretta](https://github.com/stefanocoretta) | [\#362](https://github.com/rstudio/rticles/pull/362) | `pihph_article()` | -| [PLOS](https://plos.org/#journals) | [@sjmgarnier](https://github.com/sjmgarnier) | [\#12](https://github.com/rstudio/rticles/pull/12) | `plos_article()` | -| [PNAS: Proceedings of the National Academy of Sciences](https://www.pnas.org/) | [@cboettig](https://github.com/cboettig) | [\#72](https://github.com/rstudio/rticles/pull/72) | `pnas_article()` | -| RSOS: Royal Society Open Science `https://www.royalsocietypublishing.org/journal/rsos` | [@ThierryO](https://github.com/ThierryO) | [\#135](https://github.com/rstudio/rticles/pull/135) | `rsos_article()` | -| [RSS: Royal Statistical Society](https://rss.org.uk/) | [@carlganz](https://github.com/carlganz) | [\#110](https://github.com/rstudio/rticles/pull/110) | `rss_article()` | -| [Sage](https://uk.sagepub.com/en-gb/eur/manuscript-submission-guidelines) | [@oguzhanogreden](https://github.com/oguzhanogreden) | [\#181](https://github.com/rstudio/rticles/pull/181) | `sage_article()` | -| [Springer](https://www.springernature.com/gp/authors/campaigns/latex-author-support) | [@strakaps](https://github.com/strakaps) | [\#164](https://github.com/rstudio/rticles/pull/164) | `springer_article()` | -| [Springer Lecture Notes in Computer Science (LCNS)](https://www.springer.com/gp/computer-science/lncs/conference-proceedings-guidelines) | [@eliocamp](https://github.com/eliocamp/) | [\#445](https://github.com/rstudio/rticles/issues/445) | `lncs_article()` | -| SIM: Statistics in Medicine `https://onlinelibrary.wiley.com/journal/10970258)` | [@ellessenne](https://github.com/ellessenne) | [\#231](https://github.com/rstudio/rticles/pull/231) | `sim_article()` | -| [Taylor & Francis](https://www.tandfonline.com/) | [@dleutnant](https://github.com/dleutnant) | [\#218](https://github.com/rstudio/rticles/pull/218) | `tf_article()` | -| [The R Journal](https://journal.r-project.org/) | | | `rjournal_article()` | -| [TRB](https://trb.secure-platform.com/a/page/TRBPaperReview) | [@gregmacfarlane](https://github.com/gregmacfarlane) | [\#427](https://github.com/rstudio/rticles/pull/427) | `trb_article()` | -| [Wellcome Open Research](https://wellcomeopenresearch.org) | [@arnold-c](https://github.com/arnold-c) | [\#436](https://github.com/rstudio/rticles/pull/436) | `wellcomeor_article()` | + ++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
JournalC ontributorsPull requestOutput format
ACM: +Association for Computings Machiner y@ramna thv#8acm _article()
ACS https://pu bs.acs.org@y ufree#15acs _article()
AEA: +American Economic Associati on@sbo ysel#86aea_ articles()
AGU https:// agupubs.onl inelibrary. wiley.com/@elioc amp#199agu _article()
AJS: Austrian Journal of S +tatistics@ +matthias-da#437ajs _article()
AMS: American Met +eorological S ociety@y ufree#96ams _article()
ASA: American Statistical Association +ht tps://www.a mstat.org/#111asa _article()
arXi v pre-prints based on +George Kour’s template
+@alexpghaye +s		#236arxiv _article()
B +ioinformati cs[@Sh ixiangWang] (https://gi +thub.com/Sh ixiangWang)#297bio informatics _article()
Biometri +cs@ +daltonhance#170biometrics _article()
Bulletin de +l’AMQ@des autm#145amq _article()
Copernicus +Public ations@ nuest, @R LumSK# 172, +#342copernicus _article()
CTeXctex()
El sevier@cboett ig, @ robjhyndman#27, #467elsevier _article()
Frontie rs@ +muschellij2#211frontiers _article()
Glossa@stefan +ocoretta#361glossa _article()
IEEE +Transaction@Emaa sit,
+@espinielli, +[@n athanweeks] (https://gi +thub.com/na thanweeks), @D +unLug		#97, # 169, # 227, # 263, # 264, #265ieee _article()
IMS: Institute of M athematical +Statistics AoAS: +Annals of Applied Statistics@auzah eta#372ims _article()
INFORMS: Institute for +Operations Research and the Management Sc iences@ +robjhyndman#460informs _article()
ISBA: In ternational Society for +Bayesian Analysis@dmi 3nko#461isba _article()
IOP: Institute of Physics +(https: //iopscienc e.iop.org)@ +robjhyndman#462iop _article()
JASA: Journal of the +Acoustical Society of Americ a@stefan +ocoretta#364jasa _article()
Journal +of Educational Data Min ing journal submissions@ +jooyoungseo#251jedm _article()
JOSS: Journal of Open Source +S oftware JOSE: Journal of +Open Source Ed ucation@noamr oss#229joss _article()
[JSS: Journal of Statistical Software] (https://ww w.jstatsoft .org/index)jss _article()
LI +PIcs
+@nuest		#288lipics _article()
[MDPI] (https://ww +w.mdpi.com)@dleutnan t, @mps 9506# 147, +#515mdpi _article()
MNRAS: Monthly +Notices of the Royal A stronomical Society@ +oleskiewicz#175mnras _article()
[OUP: Oxford University Press] (https://ac ademic.oup. com/pages/a uthoring/jo +urnals/prep aring_your_ manuscript)@dmkap lan#284oup_ articles()
PeerJ: Journal of Life and En +vironmental Scienc es@zka mvar#127peerj _article()
PiHPh: +Papers in Historical Phono logy@stefan +ocoretta#362pihph _article()
PLOS@sjmgarnie r#12plos _article()
PNAS: Proceedings of the National +Academy of Sciences@cboet tig#72pnas _article()
RSOS: Royal Society Open Science +https:// www.royalso cietypublis hing.org/jo urnal/rsos@Thier ryO#135rsos _article()
RSS: Royal Statistical +Society@carlg anz#110rss _article()
Sage@oguzha +nogreden#181sage _article()
Spring +er@strak aps#164springer _article()
Springer +Lecture Notes in Computer Science (LCN S)@elioca mp#4 +45lncs _article()
SIM: Statistics in Medicine +https: //onlinelib rary.wiley. com/journal /10970258)@ellessenn e#231sim _article()
Taylor & Franc +is@dleutna nt#218tf _article()
The R +Journal

Use rjtools +package now

+

rjournal _article() ( deprecated)

[TRB] (https://tr b.secure-pl +atform.com/ a/page/TRBP aperReview)@gregma +cfarlane#427trb _article()
Wellcome Open +Research@arnol d-c#436wellcomeor _article()
You can also get the list of available journal names with `rticles::journals()`. diff --git a/vignettes/articles/_child_examples.Rmd b/vignettes/articles/_child_examples.Rmd index dfeeb7256..94e6b0ab0 100644 --- a/vignettes/articles/_child_examples.Rmd +++ b/vignettes/articles/_child_examples.Rmd @@ -16,12 +16,22 @@ if (!dir.exists(hash_db_dir)) dir.create(hash_db_dir) out_dir <- "resources" if (!dir.exists(out_dir)) dir.create(out_dir) -# exclude ctex for now -journals <- setdiff(journals(), "ctex") +# ignore some journals +to_ignore <- c( + "ctex", # exclude ctex for now (issue to build) + "rjournal" # lives in rjtools package now. +) -for (journal in journals) { +for (journal in journals()) { hash_db_file <- file.path(hash_db_dir, xfun::with_ext(journal, ".rds")) out_files <- file.path(out_dir, xfun::with_ext(paste0(journal, "_article"), c("gif", "pdf"))) + # clean for ignored journal + if (journal %in% to_ignore) { + # clean files + to_remove <- xfun::existing_files(c(out_files, hash_db_file)) + if (length(to_remove)) unlink(to_remove) + next + } # clean cache if no more files if (!all(file.exists(out_files))) unlink(hash_db_file) # Should we render new resource ?