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samtools.ver
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samtools.ver
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samtools 1.16
Using htslib 1.16
Copyright (C) 2022 Genome Research Ltd.
Samtools compilation details:
Features: build=configure curses=yes
CC: gcc
CPPFLAGS: -I/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/include
CFLAGS: -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC
LDFLAGS: -L/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/GCCcore/10.2.0/lib64 -L/vast/palmer/apps/avx2/software/GCCcore/10.2.0/lib
HTSDIR: htslib-1.16
LIBS: -lm -lpthread
CURSES_LIB: -lncursesw
HTSlib compilation details:
Features: build=configure libcurl=yes S3=yes GCS=yes libdeflate=no lzma=yes bzip2=yes plugins=no htscodecs=1.3.0
CC: gcc
CPPFLAGS: -I/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/include -I/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/include
CFLAGS: -O2 -ftree-vectorize -march=native -fno-math-errno -fPIC
LDFLAGS: -L/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/cURL/7.72.0-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/XZ/5.2.5-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/bzip2/1.0.8-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/zlib/1.2.11-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/ncurses/6.2-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/lib64 -L/vast/palmer/apps/avx2/software/binutils/2.35-GCCcore-10.2.0/lib -L/vast/palmer/apps/avx2/software/GCCcore/10.2.0/lib64 -L/vast/palmer/apps/avx2/software/GCCcore/10.2.0/lib -fvisibility=hidden
HTSlib URL scheme handlers present:
built-in: preload, data, file
S3 Multipart Upload: s3w, s3w+https, s3w+http
Amazon S3: s3+https, s3+http, s3
Google Cloud Storage: gs+http, gs+https, gs
libcurl: imaps, pop3, http, smb, gopher, ftps, imap, smtp, smtps, rtsp, ftp, telnet, smbs, https, tftp, pop3s, dict
crypt4gh-needed: crypt4gh
mem: mem