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DESCRIPTION
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DESCRIPTION
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Package: liana
Type: Package
Title: LIANA: a LIgand-receptor ANalysis frAmework
Version: 0.1.14
Authors@R: c(
person(
given = "Daniel",
family = "Dimitrov",
role = c("cre", "aut"),
email = "daniel.dimitrov@uni-heidelberg.de",
comment = c(ORCID = "0000-0002-5197-2112")
),
person(
given = "Charlotte",
family = "Boys",
role = c("aut"),
email = "mm228@stud.uni-heidelberg.de",
comment = c(ORCID = "0000-0003-3955-5110")
),
person(
given = "Martin",
family = "Garrido Rodriguez",
role = c("aut"),
email = "martin.garrido@uni-heidelberg.de",
comment = c(ORCID = "0000-0003-4125-5643")
),
person(
given = "Denes",
family = "Turei",
role = c("aut"),
email = "turei.denes@gmail.com",
comment = c(ORCID = "0000-0002-7249-9379")
),
person(
given = "James",
family = "Nagai",
role = c("aut"),
email = "jshinitinaga@ukaachen.de",
comment = c(ORCID = "0000-0002-7655-7206")
))
Description: LIANA provides a number of methods and resources for ligand-receptor interaction inference from scRNA-seq data.
License: GPL-3 + file LICENSE
URL: https://saezlab.github.io/liana/
BugReports: https://github.com/saezlab/liana/issues
Encoding: UTF-8
VignetteBuilder: knitr
Depends:
R(>= 4.0)
Imports:
utils,
reticulate,
stringr,
magrittr,
purrr,
tidyr,
tibble,
dplyr,
readr,
rlang,
OmnipathR,
SingleCellExperiment,
scran,
scater,
scuttle,
SeuratObject,
tidyselect,
ggplot2,
ComplexHeatmap,
RColorBrewer,
basilisk.utils,
basilisk,
methods
Suggests:
CellChat,
knitr,
BiocStyle,
rmarkdown,
markdown,
testthat (>= 3.0.0),
sessioninfo,
Seurat,
entropy,
circlize,
furrr (>= 0.2.0),
future,
tidyverse,
devtools,
decoupleR,
ExperimentHub,
muscData,
broom
biocViews: scater, scran, SingleCellExperiment, ComplexHeatmap, muscData, ExperimentHub
Remotes: sqjin/CellChat, saezlab/OmnipathR, saezlab/decoupleR, LTLA/basilisk.utils, LTLA/basilisk
RoxygenNote: 7.2.3
Config/testthat/edition: 3