Scripts related to RNA sequencing, transcriptomics, and analysis of differential gene expression
Contains three directories:
- blacklight_pipeline
- diff_expression/
- transcriptome_analysis/
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How to get these scripts
Then in a terminal window, "cd" into a relevant directory, and clone this repository into a new_destination_directory within that:
git clone git://github.com/safay/RNA_seq/ new_destination_directory
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blacklight_pipeline/
de-novo assembly, annotation, and expression estimation in systems without a pre-existing reference
diff_expression/
analyze differential expression from files generated in the blacklight pipeline
transcriptome_analysis/
get N50, compare histograms from different transcriptomes