Merge branch 'develop' into t/21819/rewrite_error_functions_and_docum…

…entation
sagemath · Jan 28, 2017 · 7fade55 · 7fade55
2 parents be39e50 + ac31f23
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diff --git a/VERSION.txt b/VERSION.txt
@@ -1 +1 @@
-SageMath version 7.5.rc1, Release Date: 2016-12-28
+SageMath version 7.6.beta1, Release Date: 2017-01-25
diff --git a/build/bin/sage-pip-install b/build/bin/sage-pip-install
@@ -15,7 +15,9 @@
 # --no-deps          : Don't install runtime dependencies from PyPI.
 # --no-index         : Don't look at the package index.
 #                      This also disables pip's version self-check.
-pip_install_flags="--ignore-installed --verbose --no-deps --no-index"
+# --isolated         : Don't read configuration files such as
+#                      ~/.pydistutils.cfg
+pip_install_flags="--ignore-installed --verbose --no-deps --no-index --isolated"
 
 # Consume any additional pip install arguments except the last one
 while [ $# -gt 1 ]; do

diff --git a/build/pkgs/configure/checksums.ini b/build/pkgs/configure/checksums.ini
@@ -1,4 +1,4 @@
 tarball=configure-VERSION.tar.gz
-sha1=493e8dd34bd53110ba2b6ca36239b8ead312df46
-md5=b86405e6ca3828cada072c37db55eba3
-cksum=2146672182
+sha1=1a3c575cc77fb6611465d21a767a7a802c127e43
+md5=71f93688fb5feced01824ab28c3eb546
+cksum=2358556693
diff --git a/build/pkgs/configure/package-version.txt b/build/pkgs/configure/package-version.txt
@@ -1 +1 @@
-197
+203
diff --git a/build/pkgs/database_pari/checksums.ini b/build/pkgs/database_pari/checksums.ini
@@ -1,4 +1,4 @@
 tarball=database_pari-VERSION.tar.bz2
-sha1=92dcb68e7a6def53ffc5fb82e3593d5b80c940cb
-md5=652d36d18ea300193957120815298be7
-cksum=2257060384
+sha1=dd2b168da033a9fca98ce5d9d81ad76fbc1739fb
+md5=0fb372a3c8de787f84c066f81511a276
+cksum=3988008667
diff --git a/build/pkgs/database_pari/package-version.txt b/build/pkgs/database_pari/package-version.txt
@@ -1 +1 @@
-20140908
+20161017
diff --git a/build/pkgs/dot2tex/SPKG.txt b/build/pkgs/dot2tex/SPKG.txt
@@ -7,8 +7,7 @@ by Graphviz a more LaTeX friendly look and feel. This is accomplished
 by converting xdot output from Graphviz to a series of PSTricks or
 PGF/TikZ commands.
 
-See http://www.fauskes.net/code/dot2tex/
-or http://dot2tex.googlecode.com/
+See https://github.com/kjellmf/dot2tex/
 
 == License ==
  * MIT

diff --git a/build/pkgs/eclib/checksums.ini b/build/pkgs/eclib/checksums.ini
@@ -1,4 +1,4 @@
 tarball=eclib-VERSION.tar.bz2
-sha1=acd51ec5e7ab7be6a3151fe645320f71c6a11ede
-md5=ac1eee9c42b1b6987173f574b6f43744
-cksum=673064945
+sha1=b5098fe705dcea8f492e5e331ad8a69f5721898f
+md5=af8c339c44155ed813cb40f39fcfe344
+cksum=2757924773
diff --git a/build/pkgs/eclib/package-version.txt b/build/pkgs/eclib/package-version.txt
@@ -1 +1 @@
-20160720
+20170104
diff --git a/build/pkgs/enum34/SPKG.txt b/build/pkgs/enum34/SPKG.txt
@@ -0,0 +1,9 @@
+= enum34 =
+
+== Description ==
+
+Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4
+
+An enumeration is a set of symbolic names (members) bound to unique,
+constant values. Within an enumeration, the members can be compared by
+identity, and the enumeration itself can be iterated over.
diff --git a/build/pkgs/enum34/checksums.ini b/build/pkgs/enum34/checksums.ini
@@ -0,0 +1,4 @@
+tarball=enum34-VERSION.tar.gz
+sha1=014ef5878333ff91099893d615192c8cd0b1525a
+md5=5f13a0841a61f7fc295c514490d120d0
+cksum=3196958404
diff --git a/build/pkgs/enum34/dependencies b/build/pkgs/enum34/dependencies
@@ -0,0 +1,5 @@
+$(PYTHON) | pip
+
+----------
+All lines of this file are ignored except the first.
+It is copied by SAGE_ROOT/build/make/install into SAGE_ROOT/build/make/Makefile.
diff --git a/build/pkgs/enum34/package-version.txt b/build/pkgs/enum34/package-version.txt
@@ -0,0 +1 @@
+1.1.6
diff --git a/build/pkgs/enum34/spkg-install b/build/pkgs/enum34/spkg-install
@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+cd src && $PIP_INSTALL .
diff --git a/build/pkgs/enum34/type b/build/pkgs/enum34/type
@@ -0,0 +1 @@
+standard
diff --git a/build/pkgs/gambit/spkg-install b/build/pkgs/gambit/spkg-install
@@ -21,8 +21,7 @@ if [ $? -ne 0 ]; then
 fi
 
 cd src/python
-python setup.py build
-python setup.py install
+python setup.py --no-user-cfg build install
 
 if [ $? -ne 0 ]; then
     echo "Error installing Python API"

diff --git a/build/pkgs/giac/dependencies b/build/pkgs/giac/dependencies
@@ -1,4 +1,4 @@
-readline $(MP_LIBRARY) mpfr mpfi ntl gsl pari
+readline $(MP_LIBRARY) mpfr mpfi ntl gsl pari libpng
 
 ----------
 All lines of this file are ignored except the first.

diff --git a/build/pkgs/git/checksums.ini b/build/pkgs/git/checksums.ini
@@ -1,4 +1,4 @@
 tarball=git-VERSION.tar.gz
-sha1=ff32a94936309ca3f0e3d56e479e7510a3c1c925
-md5=da293290da69f45a86a311ad3cd43dc8
-cksum=2025246710
+sha1=21a227ac7f3a8b3c29e6d6fbd13f7a6b958c81ed
+md5=eac9324afcf4c95ab11acb2e2283e376
+cksum=2000477778
diff --git a/build/pkgs/git/package-version.txt b/build/pkgs/git/package-version.txt
@@ -1 +1 @@
-2.6.2
+2.11.0
diff --git a/build/pkgs/gp2c/checksums.ini b/build/pkgs/gp2c/checksums.ini
@@ -1,4 +1,4 @@
 tarball=gp2c-VERSION.tar.gz
-sha1=e07cebffcd09c0d644d52335130984f33042b46f
-md5=3f6bb47d41ddca7b6a4938d16abbe4e8
-cksum=3338275717
+sha1=6bce2bbb69227de44fa768619d1dffa861d6470a
+md5=41d3e76fb070ba7f73242b76ae5cb529
+cksum=2256538341
diff --git a/build/pkgs/gp2c/package-version.txt b/build/pkgs/gp2c/package-version.txt
@@ -1 +1 @@
-0.0.9pl5
+0.0.10
diff --git a/build/pkgs/gsl/package-version.txt b/build/pkgs/gsl/package-version.txt
@@ -1 +1 @@
-2.1.p0
+2.1.p1
diff --git a/build/pkgs/gsl/patches/gsl-2.1-gslcblas.patch b/build/pkgs/gsl/patches/gsl-2.1-gslcblas.patch
@@ -0,0 +1,16 @@
+Do not include gslcblas in .pc. We already have the selected cblas
+added to libs. Which could be an external cblas if someone wanted too.
+
+diff --git a/gsl.pc.in b/gsl.pc.in
+index 5e9ef21..3a70648 100644
+--- a/gsl.pc.in
++++ b/gsl.pc.in
+@@ -2,7 +2,7 @@ prefix=@prefix@
+ exec_prefix=@exec_prefix@
+ libdir=@libdir@
+ includedir=@includedir@
+-GSL_CBLAS_LIB=-lgslcblas
++GSL_CBLAS_LIB=
+
+ Name: GSL
+ Description: GNU Scientific Library
diff --git a/build/pkgs/ipykernel/checksums.ini b/build/pkgs/ipykernel/checksums.ini
@@ -1,4 +1,4 @@
 tarball=ipykernel-VERSION.tar.gz
-sha1=1a16f3366a655edd1c0dc264fc3fe1489cf2c2df
-md5=0b1150602203af298631555509a809bd
-cksum=69264790
+sha1=b94d49af3a9a89eb9b4d32c63868b8fcb689de19
+md5=4048987076b85814202cd29b1dd3fc7b
+cksum=1741951088
diff --git a/build/pkgs/ipykernel/package-version.txt b/build/pkgs/ipykernel/package-version.txt
@@ -1 +1 @@
-4.3.1.p0
+4.5.2
diff --git a/build/pkgs/jupyter_client/checksums.ini b/build/pkgs/jupyter_client/checksums.ini
@@ -1,4 +1,4 @@
 tarball=jupyter_client-VERSION.tar.gz
-sha1=909b47a92960364300765a36963c8c9bf9c179ab
-md5=4ae3d5e04baea1e8fa8d3ec24c600c17
-cksum=854482584
+sha1=1455be4a05b45051f83ae30a10d97a432fa5e01e
+md5=8a428a07cbcd4f2e4ca7c2f728b718ea
+cksum=1097112492
diff --git a/build/pkgs/jupyter_client/package-version.txt b/build/pkgs/jupyter_client/package-version.txt
@@ -1 +1 @@
-4.3.0.p0
+4.4.0
diff --git a/build/pkgs/jupyter_core/checksums.ini b/build/pkgs/jupyter_core/checksums.ini
@@ -1,4 +1,4 @@
 tarball=jupyter_core-VERSION.tar.gz
-sha1=7836ef4bbe750048361624c6a3968ed733bf8f6a
-md5=78f6add824eef72b12e0f6e6940372b3
-cksum=3147890695
+sha1=983a8eca910b3ac4290f1944fe6589770c254b1d
+md5=f707f8693e537177341c4a89081fdac3
+cksum=3375597820
diff --git a/build/pkgs/jupyter_core/package-version.txt b/build/pkgs/jupyter_core/package-version.txt
@@ -1 +1 @@
-4.1.0.p0
+4.2.1
diff --git a/build/pkgs/modular_decomposition/type b/build/pkgs/modular_decomposition/type
@@ -1 +1 @@
-optional
+experimental
diff --git a/build/pkgs/mpmath/SPKG.txt b/build/pkgs/mpmath/SPKG.txt
@@ -8,7 +8,7 @@ Mpmath is a pure-Python library for multiprecision floating-point arithmetic. It
 
  * Author: Fredrik Johansson
  * Email: fredrik.johansson@gmail.com
- * Website: http://code.google.com/p/mpmath/
+ * Website: https://github.com/fredrik-johansson/mpmath/
 
 == Dependencies ==
 

diff --git a/build/pkgs/nbformat/checksums.ini b/build/pkgs/nbformat/checksums.ini
@@ -1,4 +1,4 @@
 tarball=nbformat-VERSION.tar.gz
-sha1=c823d95938cb12b8e8af918bd2e547d3ca966e4f
-md5=684c4dc3c6fd8036fd1ae1c908003e23
-cksum=3054783982
+sha1=96c8836cc2ef1457b150d61bb7f20cdcab64d66c
+md5=f90f24d317b651226a6b547fa69d8da4
+cksum=159106855
diff --git a/build/pkgs/nbformat/package-version.txt b/build/pkgs/nbformat/package-version.txt
@@ -1 +1 @@
-4.0.1.p0
+4.2.0
diff --git a/build/pkgs/notebook/checksums.ini b/build/pkgs/notebook/checksums.ini
@@ -1,4 +1,4 @@
 tarball=notebook-VERSION.tar.gz
-sha1=cec36e2d1aa7835f2b4dda7dde8455d33a06361a
-md5=09e727ba598ab1848327d211fd2ad057
-cksum=2780054946
+sha1=ab665a9b0f42a6fc430dfe61db83a8d54bce3f97
+md5=70cc97ad19c0f9246ad295a653475e2a
+cksum=660926754
diff --git a/build/pkgs/notebook/package-version.txt b/build/pkgs/notebook/package-version.txt
@@ -1 +1 @@
-4.2.1.p0
+4.3.1
diff --git a/build/pkgs/numpy/spkg-install b/build/pkgs/numpy/spkg-install
@@ -49,7 +49,9 @@ rm -rf "$SAGE_LOCAL/lib/python/site-packages/numpy"
 # Program around a bug in SciPY's distutils.
 unset CFLAGS
 
-python setup.py install \
+python setup.py \
+        --no-user-cfg \
+       install \
        --single-version-externally-managed \
        --record /dev/null \
        ${NUMPY_FCONFIG}

diff --git a/build/pkgs/pari/checksums.ini b/build/pkgs/pari/checksums.ini
@@ -1,4 +1,4 @@
 tarball=pari-VERSION.tar.gz
-sha1=efd1eb6b8d87066b2b9f3b2c38ecb30bbfdb48d2
-md5=f3f3342913a3b3b306970b3462f4d47d
-cksum=1553747906
+sha1=ad6af366153ae160aaa4cb49edf3a32a69f7afc1
+md5=f997d6b526df6cd9145af0de5b822bf4
+cksum=2625551585
diff --git a/build/pkgs/pari/package-version.txt b/build/pkgs/pari/package-version.txt
@@ -1 +1 @@
-2.8.0.alpha.p2
+2.9.1.p0
diff --git a/build/pkgs/pari/patches/README.txt b/build/pkgs/pari/patches/README.txt
@@ -14,8 +14,3 @@ Patches to configuration files:
 C files:
 * stackwarn.patch (Jeroen Demeyer, #19883): do not display warnings
   regarding the stack size (unless DEBUGMEM is set).
-
-Building documentation
-* perl_inc.patch (Francois Bissey, #21622): import upstream patch
-to deal with perl install where "." is not part of @INC anymore
-in perl.
diff --git a/build/pkgs/pari/patches/fix_constants.patch b/build/pkgs/pari/patches/fix_constants.patch
diff --git a/build/pkgs/pari/patches/perl_inc.patch b/build/pkgs/pari/patches/perl_inc.patch
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		SageMath version 7.5.rc1, Release Date: 2016-12-28
		SageMath version 7.6.beta1, Release Date: 2017-01-25