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DESCRIPTION
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DESCRIPTION
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Package: conliga
Type: Package
Title: [CO]py [N]umber from [LI]NE1 [G]enomic [A]mplicons
Version: 0.1.0
Date: 2018-07-30
Authors@R: person("Sam", "Abujudeh", email = "sam.abujudeh@cruk.cam.ac.uk",
role = c("aut", "cre"))
Maintainer: Sam Abujudeh <sam.abujudeh@cruk.cam.ac.uk>
Description: Infer relative copy number profiles from FAST-SeqS (and similar) data.
License: GPLv2
Depends:
R (>= 3.2.3),
R (<= 3.5.0)
Imports:
Rcpp (>= 0.12.3),
magrittr (>= 1.5),
tibble (>= 1.1),
ggplot2 (>= 2.2.1),
tidyr (>= 0.6.0),
dplyr (>= 0.4.3),
readr (>= 1.0.0),
purrr (>= 0.2.5),
tidyselect (>= 0.2.4),
matrixStats (>= 0.50.1),
KernSmooth (>= 2.23-15),
grid,
gridExtra (>= 2.0.0),
parallel,
scales (>= 0.4.1),
ggthemes (>= 3.4.0),
plyr (>= 1.8.3),
colorRamps (>= 2.3),
RColorBrewer (>= 1.1-2),
GenomicRanges (>= 1.22.4),
IRanges (>= 2.4.7),
rtracklayer (>= 1.30.4),
Ckmeans.1d.dp (>= 4.2.1)
BiocViews: Software
Encoding: UTF-8
LazyData: true
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.1.0