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Format the link properly but have to drop backtick formatting
Updated Task: run (markdown)
Updated MLST calling with ARIBA (markdown)
Add some explanations for the metadata file.
Add an explanation for the metadata file.
Updated Task: prepareref (markdown)
Added troubleshooting section
Added cdhit_max_memory parameter
Added note on release number for ncbi
Added ncbi command line option
Added NCBI database
Fix column 21-23 descriptions
Fix hetmin description
Fix hetmin description.
clarify presence/absence and variants only