From 3c8b3cceb1173ce21282ac1af0512fd8cde2763b Mon Sep 17 00:00:00 2001 From: Tim Stickland Date: Tue, 2 Oct 2018 15:03:55 +0100 Subject: [PATCH] update travis CI script --- .travis.yml | 14 +++++++++----- 1 file changed, 9 insertions(+), 5 deletions(-) diff --git a/.travis.yml b/.travis.yml index f518bf0..42cd4ed 100644 --- a/.travis.yml +++ b/.travis.yml @@ -2,9 +2,15 @@ dist: trusty sudo: required services: - docker - + +env: + global: + - ROOTDIR="$TRAVIS_BUILD_DIR" + before_install: - - docker build -t companion_image . + - # docker build -t companion_image . + - docker pull $DOCKER_IMAGE + - docker tag $DOCKER_IMAGE companion_image - docker run -dit -v $TRAVIS_BUILD_DIR:/tmp/companion --name companion_container companion_image /bin/bash - sleep 5 - docker container ls @@ -19,9 +25,7 @@ before_install: cache: directories: - work -env: - global: - - ROOTDIR="$TRAVIS_BUILD_DIR" + script: - docker exec companion_container /bin/bash -c 'cd /tmp/companion/test/testsuite; ./testsuite.rb -threads 2' - travis_wait docker exec companion_container /bin/bash -c 'cd /tmp/companion; ./nextflow -c loc_travis.config -c params_default.config run annot.nf --do_circos=false'