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 [![License: ISC](https://img.shields.io/badge/License-ISC-brightgreen.svg)](https://github.com/sanger-pathogens/companion/blob/master/LICENSE)  
 [![status](https://img.shields.io/badge/NAR-10.1093%2Fnar.gkw292-brightgreen.svg)](https://doi.org/10.1093/nar/gkw292)
 
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 ## Content
  * [Introduction](#introduction)
  * [Dependencies](#dependencies)
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  * [License](#license)
  * [Feedback/Issues](#feedbackissues)
  * [Citation](#citation)
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 ## Introduction
 This software is a comprehensive computational pipeline for the annotation of eukaryotic genomes (like protozoan parasites). It performs the following tasks: