Adapt FixPlugin for library for applying of SARIF fix patches (#464)

### What's done:
* Adapt FixPlugin for library for applying of SARIF fix patches

save-common/src/commonMain/kotlin/com/saveourtool/save/core/config/FixFormats.kt

@@ -0,0 +1,16 @@
+/**
+ * Classes that describe format of expected and actual fixes
+ */
+
+@file:Suppress("FILE_NAME_MATCH_CLASS", "MatchingDeclarationName")
+
+package com.saveourtool.save.core.config
+
+/**
+ * Possible formats of actual set of fixes, provided by user
+ */
+enum class ActualFixFormat {
+    IN_PLACE,
+    SARIF,
+    ;
+}

save-plugins/fix-and-warn-plugin/src/commonMain/kotlin/com/saveourtool/save/plugins/fixandwarn/FixAndWarnPlugin.kt

@@ -92,18 +92,7 @@ class FixAndWarnPlugin(
         }
 
         // Fill back original data with warnings
-        filesAndTheirWarningsMap.forEach { (filePath, warningsList) ->
-            val fileData = fs.readLines(filePath) as MutableList
-            // Append warnings into appropriate place
-            warningsList.forEach { (line, warningMsg) ->
-                fileData.add(line, warningMsg)
-            }
-            fs.write(filePath) {
-                fileData.forEach {
-                    write((it + "\n").encodeToByteArray())
-                }
-            }
-        }
+        restoreWarningsIntoExpectedFiles(filesAndTheirWarningsMap)
 
         // TODO: If we receive just one command for execution, and want to avoid extra executions
         // TODO: then warn plugin should look at the fix plugin output for actual warnings, and not execute command one more time.
@@ -136,8 +125,7 @@ class FixAndWarnPlugin(
     /**
      * Remove warnings from the given files, which satisfy pattern from <warn> plugin and save data about warnings, which were deleted
      *
-     * @files files to be modified
-     *
+     * @param files files to be modified
      * @return map of files and theirs list of warnings
      */
     private fun removeWarningsFromExpectedFiles(files: Sequence<Path>): MutableMap<Path, WarningsList> {
@@ -157,6 +145,26 @@ class FixAndWarnPlugin(
         return filesAndTheirWarningsMap
     }
 
+    /**
+     * Remove warnings into the given files, which were deleted in aim to provide clear fix changes by FixPlugin
+     *
+     * @param filesAndTheirWarningsMap map of files with corresponding warnings list, which need to be restored
+     */
+    private fun restoreWarningsIntoExpectedFiles(filesAndTheirWarningsMap: MutableMap<Path, WarningsList>) {
+        filesAndTheirWarningsMap.forEach { (filePath, warningsList) ->
+            val fileData = fs.readLines(filePath) as MutableList
+            // Append warnings into appropriate place
+            warningsList.forEach { (line, warningMsg) ->
+                fileData.add(line, warningMsg)
+            }
+            fs.write(filePath) {
+                fileData.forEach {
+                    write((it + "\n").encodeToByteArray())
+                }
+            }
+        }
+    }
+
     private fun writeDataWithoutWarnings(
         file: Path,
         filesAndTheirWarningsMap: MutableMap<Path, WarningsList>,

save-plugins/fix-plugin/src/commonMain/kotlin/com/saveourtool/save/plugins/fix/FixPlugin.kt

@@ -1,5 +1,6 @@
 package com.saveourtool.save.plugins.fix
 
+import com.saveourtool.save.core.config.ActualFixFormat
 import com.saveourtool.save.core.config.TestConfig
 import com.saveourtool.save.core.files.createFile
 import com.saveourtool.save.core.files.createRelativePathToTheRoot
@@ -62,8 +63,8 @@ class FixPlugin(
         newTag = { _, start -> if (start) "<" else ">" },
     )
 
-    // fixme: consider refactoring under https://github.com/saveourtool/save/issues/156
-    // fixme: should not be common for a class instance during https://github.com/saveourtool/save/issues/28
+    // fixme: consider refactoring under https://github.com/saveourtool/save-cli/issues/156
+    // fixme: should not be common for a class instance during https://github.com/saveourtool/save-cli/issues/28
     private var tmpDirectory: Path? = null
     private lateinit var extraFlagsExtractor: ExtraFlagsExtractor
 
@@ -94,7 +95,7 @@ class FixPlugin(
 
                 val pathMap = chunk.map { it.test to it.expected }
                 val pathCopyMap = pathMap.map { (test, expected) ->
-                    createTestFile(test, generalConfig, fixPluginConfig) to expected
+                    createCopyOfTestFile(test, generalConfig, fixPluginConfig) to expected
                 }
                 val testCopyNames =
                         pathCopyMap.joinToString(separator = batchSeparator) { (testCopy, _) -> testCopy.toString() }
@@ -117,6 +118,13 @@ class FixPlugin(
                 val stdout = executionResult.stdout
                 val stderr = executionResult.stderr
 
+                // In this case fixes weren't performed by tool into the test files directly,
+                // instead, there was created sarif file with list of fixes, which we will apply ourselves
+                if (fixPluginConfig.actualFixFormat == ActualFixFormat.SARIF) {
+                    // TODO: Apply fixes from sarif file on `testCopyNames` here
+                    // applySarifFixesToFiles(fixPluginConfig.actualFixSarifFileName, testCopyNames)
+                }
+
                 pathCopyMap.map { (testCopy, expected) ->
                     val fixedLines = fs.readLines(testCopy)
                     val expectedLines = fs.readLines(expected)
@@ -160,7 +168,7 @@ class FixPlugin(
                 }
             }
 
-    private fun createTestFile(
+    private fun createCopyOfTestFile(
         path: Path,
         generalConfig: GeneralConfig,
         fixPluginConfig: FixPluginConfig,

save-plugins/fix-plugin/src/commonMain/kotlin/com/saveourtool/save/plugins/fix/FixPluginConfig.kt

@@ -2,6 +2,7 @@
 
 package com.saveourtool.save.plugins.fix
 
+import com.saveourtool.save.core.config.ActualFixFormat
 import com.saveourtool.save.core.config.TestConfigSections
 import com.saveourtool.save.core.plugin.PluginConfig
 import com.saveourtool.save.core.utils.RegexSerializer
@@ -22,13 +23,17 @@ import kotlinx.serialization.UseSerializers
  * @property resourceNameTestSuffix suffix name of the test file.
  * @property resourceNameExpectedSuffix suffix name of the expected file.
  * @property ignoreLines mutable list of patterns that later will be used to filter lines in test file
+ * @property actualFixFormat format for type for fixes: they could be done in place or provided via Sarif file
+ * @property actualFixSarifFileName name of sarif file with list of fixes, that were made by tool
  */
 @Serializable
 data class FixPluginConfig(
     val execFlags: String? = null,
     val resourceNameTestSuffix: String? = null,
     val resourceNameExpectedSuffix: String? = null,
-    val ignoreLines: MutableList<String>? = null
+    val ignoreLines: MutableList<String>? = null,
+    val actualFixFormat: ActualFixFormat? = null,
+    val actualFixSarifFileName: String? = null,
 ) : PluginConfig {
     override val type = TestConfigSections.FIX
 
@@ -62,7 +67,9 @@ data class FixPluginConfig(
             this.resourceNameExpectedSuffix ?: other.resourceNameExpectedSuffix,
             other.ignoreLines?.let {
                 this.ignoreLines?.let { other.ignoreLines.union(this.ignoreLines) } ?: other.ignoreLines
-            }?.toMutableList() ?: this.ignoreLines
+            }?.toMutableList() ?: this.ignoreLines,
+            this.actualFixFormat ?: other.actualFixFormat,
+            this.actualFixSarifFileName ?: other.actualFixSarifFileName
         ).also {
             it.configLocation = this.configLocation
         }
@@ -73,7 +80,9 @@ data class FixPluginConfig(
         execFlags ?: "",
         resourceNameTest,
         resourceNameExpected,
-        ignoreLines
+        ignoreLines,
+        actualFixFormat ?: ActualFixFormat.IN_PLACE,
+        actualFixSarifFileName ?: "save-fixes.sarif",
     ).also {
         it.configLocation = this.configLocation
     }