You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
i came across this error in the SCEQTL_PIPELINE_QC step for the demultiplexing and doublet detection, i found out that this bugg is correlated to Numba ,
RuntimeError: cannot cache function 'rdist': no locator available for file '/opt/conda/envs/py36/lib/python3.6/site-packages/umap/layouts.py'. (scrublet job)
RuntimeError: cannot cache function 'sparse_mean_var_minor_axis': no locator available for file '/opt/conda/envs/py36/lib/python3.6/site-packages/scanpy/preprocessing/_utils.py' (doublet detection job)
one of the simple Workarounds from this issue seem to be:
Add zip_safe=False to the setup.py of the packages using Numba caching but for that its cannot be done without permission to edit the python files
i came across this error in the SCEQTL_PIPELINE_QC step for the demultiplexing and doublet detection, i found out that this bugg is correlated to Numba ,
one of the simple Workarounds from this issue seem to be:
Add zip_safe=False to the setup.py of the packages using Numba caching but for that its cannot be done without permission to edit the python files
kindly check those
numba/numba#4908
lmcinnes/umap@738bc57
.
The text was updated successfully, but these errors were encountered: