From cc392c8456dc357a3d8b8cb1f2eda0397bf1bcb5 Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:13:59 +0200 Subject: [PATCH 1/7] add testing envs --- pixi.lock | 11521 +++++++++++++++++++++++++++++++++++++++++++++-- pyproject.toml | 6 + 2 files changed, 11196 insertions(+), 331 deletions(-) diff --git a/pixi.lock b/pixi.lock index abcffd1..1f007db 100644 --- a/pixi.lock +++ b/pixi.lock @@ -5176,6 +5176,3466 @@ environments: - conda: https://conda.anaconda.org/conda-forge/win-64/zstandard-0.23.0-py312h7606c53_0.conda - conda: https://conda.anaconda.org/conda-forge/win-64/zstd-1.5.6-h0ea2cb4_0.conda - pypi: . + testpy311: + channels: + - url: https://conda.anaconda.org/conda-forge/ + indexes: + - https://pypi.org/simple + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/aiohttp-3.9.5-py311h459d7ec_0.conda + - 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__glibc >=2.17,<3.0.a0 + - cffi >=1.11 + - libgcc-ng >=12 + - python >=3.11,<3.12.0a0 + - python_abi 3.11.* *_cp311 + - zstd >=1.5.6,<1.5.7.0a0 + - zstd >=1.5.6,<1.6.0a0 + license: BSD-3-Clause + license_family: BSD + purls: + - pkg:pypi/zstandard?source=conda-forge-mapping + size: 416323 + timestamp: 1721044178290 - kind: conda name: zstandard version: 0.23.0 diff --git a/pyproject.toml b/pyproject.toml index 3c66014..49ea91d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -62,10 +62,16 @@ mne = ">=1.7.0,<1.8" mypy = ">=1.10.1,<2" pandas-stubs = ">=2.2.2.240603,<3" +[tool.pixi.feature] +py311 = {dependencies = {python="3.11.*"}} +py312 = {dependencies = {python="3.12.*"}} + [tool.pixi.environments] default = {features = [], solve-group = "default"} mne = {features = ["mne"], solve-group = "default"} jupyter = {features = ["jupyter"], solve-group = "default"} +testpy311 = ['py311'] +testpy312 = ['py312'] [tool.hatch.version] source = "regex_commit" From 314ee30ce03c657a8b69602c16c68de9cb6506ed Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:15:07 +0200 Subject: [PATCH 2/7] remove linting from test jobs --- .github/workflows/test.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 4ed1b58..f44c8de 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -23,7 +23,6 @@ jobs: cache: true locked: false frozen: false - - run: pixi run lint_ci - run: pixi run test - name: Coveralls uses: coverallsapp/github-action@v2 From a593f7e23e20fe8a49b0a13b44fa090ae34b92e4 Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:16:34 +0200 Subject: [PATCH 3/7] add testing matrix --- .github/workflows/test.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index f44c8de..b85949c 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -15,6 +15,9 @@ permissions: jobs: test: runs-on: ubuntu-latest + strategy: + matrix: + test_environment: [testpy311, testpy312] steps: - uses: actions/checkout@v4 - uses: prefix-dev/setup-pixi@v0.8.1 @@ -23,7 +26,7 @@ jobs: cache: true locked: false frozen: false - - run: pixi run test + - run: pixi run -e ${{ matrix.test_environemt }} test - name: Coveralls uses: coverallsapp/github-action@v2 lint: From a4181fbc2a13d2a2db82ddfe155fe9a8e609c2bf Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:16:45 +0200 Subject: [PATCH 4/7] fix typo --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index b85949c..7b1ef89 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -26,7 +26,7 @@ jobs: cache: true locked: false frozen: false - - run: pixi run -e ${{ matrix.test_environemt }} test + - run: pixi run -e ${{ matrix.test_environment }} test - name: Coveralls uses: coverallsapp/github-action@v2 lint: From f3be5306eabcf0f6d7909a35cee962ee76246e15 Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:20:24 +0200 Subject: [PATCH 5/7] install to be tested env --- .github/workflows/test.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 7b1ef89..c53000d 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -26,6 +26,7 @@ jobs: cache: true locked: false frozen: false + environment: ${{ matrix.test_environment }} - run: pixi run -e ${{ matrix.test_environment }} test - name: Coveralls uses: coverallsapp/github-action@v2 From c36e2a43e10b469b1f3f592b3e50e9a783539e17 Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:26:01 +0200 Subject: [PATCH 6/7] fixed quotes in f strings for python 3.11 compatibility --- pyrasa/utils/irasa_utils.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/pyrasa/utils/irasa_utils.py b/pyrasa/utils/irasa_utils.py index 830bcf2..3657f63 100644 --- a/pyrasa/utils/irasa_utils.py +++ b/pyrasa/utils/irasa_utils.py @@ -109,17 +109,17 @@ def _check_irasa_settings(irasa_params: dict, hset_info: tuple) -> None: assert np.logical_and(band_evaluated[0] >= filter_settings[0], band_evaluated[1] <= filter_settings[1]), ( f'You run IRASA in a frequency range from' - f'{np.round(band_evaluated[0], irasa_params['hset_accuracy'])} -' - f'{np.round(band_evaluated[1], irasa_params['hset_accuracy'])}Hz. \n' + f'{np.round(band_evaluated[0], irasa_params["hset_accuracy"])} -' + f'{np.round(band_evaluated[1], irasa_params["hset_accuracy"])}Hz. \n' 'Your settings specified in "filter_settings" indicate that you have ' 'a bandpass filter from ' - f'{np.round(filter_settings[0], irasa_params['hset_accuracy'])} - ' - f'{np.round(filter_settings[1], irasa_params['hset_accuracy'])}Hz. \n' + f'{np.round(filter_settings[0], irasa_params["hset_accuracy"])} - ' + f'{np.round(filter_settings[1], irasa_params["hset_accuracy"])}Hz. \n' 'This means that your evaluated range likely contains filter artifacts. \n' 'Either change your filter settings, adjust hset or the parameter "band" accordingly. \n' f'You want to make sure that band[0] / hset.max() ' - f'> {np.round(filter_settings[0], irasa_params['hset_accuracy'])} ' - f'and that band[1] * hset.max() < {np.round(filter_settings[1], irasa_params['hset_accuracy'])}' + f'> {np.round(filter_settings[0], irasa_params["hset_accuracy"])} ' + f'and that band[1] * hset.max() < {np.round(filter_settings[1], irasa_params["hset_accuracy"])}' ) From 15e6f8c973b021c9a6d183bafb229e6d3c257521 Mon Sep 17 00:00:00 2001 From: Thomas Hartmann Date: Wed, 31 Jul 2024 08:27:02 +0200 Subject: [PATCH 7/7] fixed typo --- .github/workflows/test.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index c53000d..f8d5aa7 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -26,7 +26,7 @@ jobs: cache: true locked: false frozen: false - environment: ${{ matrix.test_environment }} + environments: ${{ matrix.test_environment }} - run: pixi run -e ${{ matrix.test_environment }} test - name: Coveralls uses: coverallsapp/github-action@v2